GgaINT1013173 @ galGal4
Intron Retention
Gene
ENSGALG00000008966 | FBXW5
Description
F-box/WD repeat-containing protein 5 [Source:RefSeq peptide;Acc:NP_001025865]
Coordinates
chr17:519412-520343:+
Coord C1 exon
chr17:519412-519569
Coord A exon
chr17:519570-520168
Coord C2 exon
chr17:520169-520343
Length
599 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTTTGTTCATCTGCCTGTAGATC
3' ss Score
8.47
Exon sequences
Seq C1 exon
CTGCTGTCTCCTGGTATGATGAGTTCCAGAGGCTCTACGACACCATCCCTTGCATTGAAGTGCAGGCCCTGAAGGAGCACAATGACCAGGTGTTGCACCTCAGCTTCTCTCACTCGGGCTGTTTGTTTGCATCGTGCTCCAAAGACTGTACTGTTAAG
Seq A exon
GTAAGGTGGTAGCATTCCCTGCACAAAACTTTCAGCTTTGATTTTATAAGGCTCAGCTGTGATTCAGGAAACCCGTGGAGAGGTGAGGCTTGACCAGGTGGCTCTGGGCTTTTCGTTTGTAGCTGCTGAGTTGTTCTCAAAGCCACAGAACTACTGCCTTTTGCCACTGCAACCTTGAGAGCAGCAGATTTCAGCTTCGGCCCATCTGAAGGTAGAGGTGCCTACCTGGCTCTGGCTGCTTTCCAGGTGCAAGCCAGTCCTTCATTATAACTAACAGTGATAATGACCTGCTGCAGAAAATGTCTTGCGTGGGTGGTTGTCTTGGGAGAAATCTCTGTCAACATGCTTAAAAATCCAACTGTGTTGCTAACTTTCACTGCCTGGCCGATGGAGAAGTTTGGAGAAGCACAGTGTTTAGCTCCAGAGCTGTGGCTGTTCCCTGTCAGTGGAGCTCACAGGGAATTTGGGTCTTGAAGGTATTTAAATAGGGTTTTCAGTAACTTTTTTTGCTTTGACTGGTGAGTGCTGACAGGGCAGGTGAAGTGGGACAGCCTTCAGGCTTCTTACAGCTTCCTAACTGTTTGTTCATCTGCCTGTAG
Seq C2 exon
ATCTGGAGCAATGAGTTGGACATCTCCCTGCAGCACAGCTCCAACATGAGGCCGTACAACTGGAGCTACACACAGTTCTCCCAGTTCAACTCCGATGACTCCCTCCTTCTGGTATCAGGTGTCTTTGTGGGGCCTCACAACTCCTCATCAGGAGAGATTGCCGTAATCAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966:ENSGALT00000014582:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.7=66.0)
A:
NA
C2:
PF0040027=WD40=PD(5.1=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCTCCTGGTATGATGAGT
R:
GCTGATTACGGCAATCTCTCCT
Band lengths:
328-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]