HsaINT0063056 @ hg38
Intron Retention
Gene
ENSG00000159069 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr9:136942769-136943506:-
Coord C1 exon
chr9:136943349-136943506
Coord A exon
chr9:136942944-136943348
Coord C2 exon
chr9:136942769-136942943
Length
405 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CAGCCGCCCCTGCCGAACAGATC
3' ss Score
5
Exon sequences
Seq C1 exon
CGGCCATGTCCTGGTACGAGGAGTTCCAGCGGCTGTATGACACGGTGCCCTGCGTGGAGGTGCAGACGCTGCGGGAACACACAGACCAGGTCCTGCACCTCAGCTTCTCCCATTCCGGGTACCAGTTCGCGTCCTGCTCCAAGGACTGCACTGTGAAG
Seq A exon
GTGAGGACGGCCAGGTGTCCTGCACACCCCACCCAGCTCTGCCGCAGCACGGAGGTCCCAGGACCCAGGCGTTCCAACCAGGTGGTGGTGGGGGGGGGGGTGGGTCAGGCCAGAGGTGACAGCAGCCTCCCTGCATCCAGCGGAGGGACCACAGAGGATCAGGAGCGGTGCAGGGTGGCCCTGAGTGCTGAGGAGAGGGTCCCACACACAGCCGCCTGCTTCAGGGGCAGGCTCCTCCGCTCTATACCAATGCCCCCCGAGTGGATGACAGTGGCTGGAAGGGGTCCCTGCTCCCTGGTGGCCTCTGAGTAGGGCTGGCAGAGCTGGGGCCTCATGGCTGTGTAGTAGCAGGCCCCCGCCCCGCGACCTGGCCAGGCGATCACTACAGCCGCCCCTGCCGAACAG
Seq C2 exon
ATCTGGAGCAACGACCTGACCATCTCGCTGCTGCACAGCGCGGACATGCGGCCCTACAACTGGAGCTACACCCAGTTCTCCCAGTTCAACAAGGACGACTCGCTACTGCTGGCCTCGGGGGTGTTCCTGGGGCCGCACAACTCCTCATCCGGCGAGATTGCTGTCATCAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159069:ENST00000325285:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.7=66.0)
A:
NA
C2:
PF0040027=WD40=PD(5.1=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTCCTGGTACGAGGAGT
R:
CTGATGACAGCAATCTCGCCG
Band lengths:
325-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development