MmuINT0063574 @ mm9
Intron Retention
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25357921-25358565:+
Coord C1 exon
chr2:25357921-25358078
Coord A exon
chr2:25358079-25358390
Coord C2 exon
chr2:25358391-25358565
Length
312 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTGCAGCCTTTCTGGAACAGATC
3' ss Score
5.31
Exon sequences
Seq C1 exon
CGGCCACATCCTGGTATGAGGAGTTCCGGCGGCTCTATGACATGGTACCCTGTGTGGAGGTGCAGACACTGAAGGAGCACACTGACCAGGTCCTGCACCTCAGCTTCTCCCACTCGGGGTACCAGTTTGCCTCCTGCTCCAAGGACTGCACGGTGAAG
Seq A exon
GTGAGGGTGCCTCTCCCATGCAGCAGAACTCAGTGGGAAGAGAAGCCAATGGTGAGAGAAGCAGAGAGGGCCACATAGTGCCTGGAGGCCTGCTCTGGACCACACAAGACCCAAAGCTTAGAACAGCTCTAATCTCTAGCTCCCAGGGTCAGCCCTCTACATTGGTACGATGTCATAAGAGTGGGTGGTAAAGACCTAGGCCAAGGTTCTTGCCCCATGAGGACCCAGAACCCTCAATGGAGAAGAGTCAGGATTTGCTGTGCTGCCAGAGTGAACTGGCCTGGTAATTACCCTGCAGCCTTTCTGGAACAG
Seq C2 exon
ATCTGGAACAACGACCTGACCATCTCACTGCTGCACAGTGCAGATATGAGGCCATACAACTGGAGTTACACCCAGTTTTCCCAGTTCAACCAGGATGACTCACTGCTGCTGGCCTCAGGGGTGTTCCTGGGGCCACATAACTCCTCCTCAGGCGAGATAGCTGTCATCAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095-Fbxw5:NM_013908:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.7=66.0)
A:
NA
C2:
PF0040027=WD40=PD(5.1=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACATCCTGGTATGAGGA
R:
TGATGACAGCTATCTCGCCTGA
Band lengths:
326-638
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: