GgaINT1013669 @ galGal4
Intron Retention
Gene
ENSGALG00000000993 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:HGNC:23375]
Coordinates
chr17:9612166-9612516:+
Coord C1 exon
chr17:9612166-9612187
Coord A exon
chr17:9612188-9612388
Coord C2 exon
chr17:9612389-9612516
Length
201 bp
Sequences
Splice sites
5' ss Seq
CATGTAAAG
5' ss Score
1
3' ss Seq
TACAATAAAATATTTTTTACAGG
3' ss Score
-3.23
Exon sequences
Seq C1 exon
GTTATTATGGTCCTCTATGCAT
Seq A exon
GTAAAGTACAAATCACAGTGCAGGTTAAGTATCAGTAAAGTAGGCATTAAGAGCAGAGAAACAGTTTATCAGTTTGATATTTTATATTGGGATTACTACTTAATTTCTCTTCATTGTTTTTGTTAATTGTTTCTTGGATTATTATCCCTGTATATTTAGGAACTGGTGTTCAAATCAGATTTACAATAAAATATTTTTTAC
Seq C2 exon
AGGTCCTTCAAATCGCTCCAACTCAGTATCATCTTTGGATTTGGAAGGGGAGTCTGTATCAGAGCTCGGTGCAGGTCCGTCTGGGAGCAATGGTGTTGAAGCTCTGCAGCTGCTGGAGCATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993:ENSGALT00000001466:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.864
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]