HsaINT0067742 @ hg38
Intron Retention
Gene
ENSG00000165219 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:HGNC:23375]
Coordinates
chr9:125321433-125323923:+
Coord C1 exon
chr9:125321433-125321562
Coord A exon
chr9:125321563-125323797
Coord C2 exon
chr9:125323798-125323923
Length
2235 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
CACTATAAACATTTCTCTAGGTC
3' ss Score
7.32
Exon sequences
Seq C1 exon
GTCCTAAACATGCAGCTTTCGGATGGAGGACAAGGAGATGTCCCTGTTGATGAAAACAAACTCCATGGTAAACCTGATAAAACCTTGCGCTTTTCCCTCTGCAGTGATAATCTGGAAGGAATATCTGAAG
Seq A exon
GTGAAGGGTTACTTCATTCAAGGAGTTGTGTGGTTCAATTAATAGTTTGTTTTGTGTTTTTTAAAGGAGCTTATAAATTATAATTATACCATCTGTGCTTCTCACTGAGGAGACTAATGAAGATTTCCTCTAATGAGCCTGAACAGTTGGCTGTAAAGATTGTTTCCTGAATAAAATTAAAATTGCAAGATGCCTTTGGTCATATAAAATGGAGAAGATATGTCTTTATTCAGACTTAAATAGAATAACAGCAAGTTCTGTTTCTGCAGTATTAATATATACCAAAGCTTATAGAGCTCCTTTAGAAGGATATCATGCATGTCGAAACGGGAAAAAATGGACTTACTAGTATTTCAATATGTTGCACATACTCTTAAATGTTCTGTATTCCTTTACTCACACTCACACATACCTTTATGAAGCAGAAGACAATGGAAATAGGTATTAAAAAGAAAATTCAAAGCCAAGATTGTGAAATGAGAATATGTCATTTTGCCTACTAGTACCAATTTTTTTTTTTTGAGACAGAGTCTCGTTCGTTGCCCAGGCTGGAGTGCAGTGTCGCAATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGCATAGTTGGGACTACAGGCACCCGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCCCGGGTTTTTTTTTATTTAAAGACAATAGTTCAAATTTACTGACATTTAAAAAGAAACCTAAAATATAATAACTTCATATTTTAATCTGACTTTTCCAAAAAAATGACATGTAATGTATGTTCATTCTACAAAACAGAGAAATAGAATCACCTATAATCTCAAAATTTTGTTGATAGCAGTTGACGTTTTAGATTATTCACAGCAAAATTAGGTTTATCCTGTTTTGTAACCTTTTGTAATTTAATAATATGGCATTAACATTTCCCTTTGTAATTTAACATTCTTAAATAACATGGTTTTTATGGCTGTTTTCCTTAACCTCACATGGCATATCATAATTTTTTTCAACTTTCTTCTGTGATTAAATCTATAGATTTCTTCCACTTTTTGGACATAATAACTTCTGGGCTGGGCGAAGTGGCTCATGCCTCTAATCCCAGCACTTTGGGATGCCGAGGTGGGTGGATTCACTGAGCTCAGGAGTTTGAGACCAGCCTGGGCAACACGGTGAAACCCCATCTCTACTAAAATACAACAAATTAGCTGGGTGTGGCAGCGTGTGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATTGCTTGAACCAGGGAGGCGGAGGTTGCAGTGAGCCAAGATGGTGCCACTGCATTCCAGCTTGGACGATAGAGCGAGACTCTCTCTAAAAAAAAAAAAAAAAAAGAAGAAAAAGCTCTATAACAAGCAACTTTAGATTAATTATTATTATTATTTTTTGAGATGGAGTCTCACTTTTGTTGCCCAGGCTGGAGTGCAATGATGCGATCTCAGCTCACTGCAACCTTTGCCTCCCGGGTTCAAGCAATTCCCCTGCCTCAGCCTCCTAAGTAGCTGAGATTACAGGCATGTGCCATCAGGCCGGCTAATTTTTATATTTTTTGTTTTGTTTTGTTGTGTTGTGTTTTGTTTTGTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCCCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGTACTACAGGTGCCCGCCACCACGCCTGGCTAAATTTTTATATTTTTAGTAGAGGCTGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCACCTCAGCCTCCCAAAGTACTGGGATTACAGGCATGAGGCATTGCACCCAGCAGATTAATTTGTTATTAGCACCTTAGGATAAATTCCTAGAAGCAGAATTTCTCAAAGGGCATGTGTTTTTTTAAGGTATAAAAAGTATTAAAAACACTTTAATCAGTTGTTAGTCTTTTATCAAGGCATGAAAAATTGTGTGGTGGCTCATGACTGTTTTAAAAAGATTGCTCACACTATAAACATTTCTCTAG
Seq C2 exon
GTCCTTCAAATCGCTCCAATTCAGTGTCCTCCCTAGACCTAGAAGGAGAGTCTGTGTCAGAACTTGGAGCAGGACCTTCTGGCAGTAATGGAGTTGAAGCTCTACAGCTGTTAGAACATGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165219:ENST00000467750:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.979 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF153241=TALPID3=FE(20.4=100)
A:
NA
C2:
PF153241=TALPID3=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development