GgaINT1014857 @ galGal4
Intron Retention
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9651454-9651770:+
Coord C1 exon
chr13:9651454-9651549
Coord A exon
chr13:9651550-9651670
Coord C2 exon
chr13:9651671-9651770
Length
121 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
TCCCCATCTCCTGTTGGCAGCAC
3' ss Score
6.34
Exon sequences
Seq C1 exon
GCTGTGCTGCTGACCTGGACCAAAGGCTTCAACGCCTCCGGCTGCGTAGGGCAGGACGTGGTTCAGATGCTGCGGGAGGCTGCGCAGCGCAAACAG
Seq A exon
GTGGGAAAGGGCTGGGGGTCTGTCCCCTGAGCCCAGTGTGGCCGCCCTGCACCCCTCTGGTGACACCTGGCAGAGCTGTCTGGGTGCTGCTGCGCCACGTGTCCCCATCTCCTGTTGGCAG
Seq C2 exon
CACACAACGCTGAAGGTGGTGGCTGTGGTGAACGACACCGTGGGGACCATGATGGCCTGTGGCTACCATGACCCCAAGTGTGAAATTGGCCTCATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287:ENSGALT00000045865:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.3=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.3=67.6),PF0372711=Hexokinase_2=PU(3.2=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTGCTGACCTGGAC
R:
CCACAATGAGGCCAATTTCACAC
Band lengths:
195-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]