BtaINT0072328 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39696436-39696799:-
Coord C1 exon
chr7:39696704-39696799
Coord A exon
chr7:39696536-39696703
Coord C2 exon
chr7:39696436-39696535
Length
168 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GGCATCCTTTTTTTGTGCAGGCA
3' ss Score
7.44
Exon sequences
Seq C1 exon
GGCATCCTCCTGAACTGGACAAAGGGTTTCAATGCATCTGACTGCGAGGGCCAAGACGTTGTGTGTCTGCTGCGGGAAGCCATCAGGCGCCGACAG
Seq A exon
GTAAGGAGTCTGTCTCCAGGGCTGCTTTGGTGCAACAGGCCTTGAAGGGAGCGAGGGGTCTCCGTCTGCCTGCTGGGGGGCCCTCTGCAGTAGAGACCTCTGGGTCTGGTGCTGGTTGCTGTGACAACCGCGTTGCCCAGCAACTAGAGGCATCCTTTTTTTGTGCAG
Seq C2 exon
GCAGTGGAGCTGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGTGGCTACGAGGACCCCCATTGCGAGGTCGGCCTCATCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898:ENSBTAT00000019834:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.5=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.5=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCCTCCTGAACTGGACA
R:
AGGCCGACCTCGCAATGG
Band lengths:
188-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]