RnoINT0070982 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10149821-10150194:+
Coord C1 exon
chr17:10149821-10149916
Coord A exon
chr17:10149917-10150094
Coord C2 exon
chr17:10150095-10150194
Length
178 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CAGCATCCGTTTGCATGCAGGCA
3' ss Score
5.13
Exon sequences
Seq C1 exon
GGCATCCTCCTCAACTGGACTAAGGGGTTCAATGCATCAGGCTGCGAGGGCCAAGATGTTGTGTATTTATTACGGGAAGCCATTAGGCGCAGACAG
Seq A exon
GTAGGAATCTACCTCCAGGGGTGCTTTGGGGGCTGTGACAGGCCTGGAGGGGAGCAAAGTATCATTCTCTTCCTTGAGGGGAGCAAAGGGGTTCTCTATAATAGAGACCTCTGAGTCCAGTACTGGTTACCATGGCAACTATGTTGCCCGGCAACTAGCAGCATCCGTTTGCATGCAG
Seq C2 exon
GCAGTGGAGCTGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGTGGCTATGATGATCCCTGTTGTGAGATGGGCCTCATTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.5=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.5=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCCTCCTCAACTGGACT
R:
CGACAATGAGGCCCATCTCAC
Band lengths:
196-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]