GgaINT0004618 @ galGal3
Intron Retention
Gene
ENSGALG00000009754 | HK2
Description
NA
Coordinates
chrUn_random:10839614-10840042:+
Coord C1 exon
chrUn_random:10839614-10839709
Coord A exon
chrUn_random:10839710-10839940
Coord C2 exon
chrUn_random:10839941-10840042
Length
231 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACCCGACCTTTCCCTTCCAGGAG
3' ss Score
11.33
Exon sequences
Seq C1 exon
GGGATTCTCCTCAAGTGGACGAAGGGTTTCAAAGCCACGGGCTGCGAAGGGGAGGACGTGGTGAGCCTGCTGAAGGAGGCAATCCACCGCAGAGAG
Seq A exon
GTGAGCGGGGCAGCTCTGCGGTGGCGTTAATTGGGCTGGGAATGAATGGGCTGGGAATGAATGGGCTGAGCGTTGGGATGCCAACCACCGCCCTTAGTCATCACATTGAGGGTGGATTTCCAGAGCCTGGAGCTAGGAGCTGAGCAGCACTGCCCTCCGCCCATCCCACCCCCTTGGGCTGCCCCATCATCCCTACGTGGGAAACCACCCAACCCGACCTTTCCCTTCCAG
Seq C2 exon
GAGTTTGACCTGGACGTGGTGGCAGTGGTGAACGACACGGTGGGCACCATGATGACCTGTGGCTACGAAGACCCCTACTGTGAAGTCGGGCTGATAGGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754:ENSGALT00000036098:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.4=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTCTCCTCAAGTGGACG
R:
CACCTATCAGCCCGACTTCAC
Band lengths:
196-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]