RnoINT0070964 @ rn6
Intron Retention
Gene
ENSRNOG00000006116 | Hk2
Description
hexokinase 2 [Source:RGD Symbol;Acc:2797]
Coordinates
chr4:113565500-113566710:-
Coord C1 exon
chr4:113566615-113566710
Coord A exon
chr4:113565600-113566614
Coord C2 exon
chr4:113565500-113565599
Length
1015 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CATCTTCTTCTTGCTATCAGGAG
3' ss Score
7.79
Exon sequences
Seq C1 exon
AGCATCCTCCTCAAGTGGACAAAGGGATTCAAGGCATCTGGCTGCGAGGGTGAGGATGTGGTCACCTTGCTGAAGGAAGCGATTCACCGGCGAGAG
Seq A exon
GTAGGAGAACAGAGAACGTAGTGCAAGGCTTGGTGTATCACATGTTACTGCTTTGTTGGGAAAATAAGCTCACTCAGCAGTGGTTGGTTAACTACTAGAAGGCCATGTTCCAGTGGCTGGTGCTGCTGTAATGGCTTTGAGGAATGGGGAGAGCACAGAGGGCTGAGCAAATAGACAAGTGGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCGAGGACAGCCTTAGGTGGCAATCCTTAAGATACCACCTCAGCCTCTGAAGGGTTGAGATCAAAGGTATATGCCACCATGCCAGCCTGGCTTTCCTTCAGTTTTTGTTTCTTTGTTTGTTTGGTTTTTAGATTTATTTCATGTATGTGAGTACACTGTTACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATCACAGATAGTTGTGAGCCACCAAGTAGTTGCTGGGAGTTGAACTCAGGACCTCTGGAAGAGCAGTCCGGGCTCTTAACCACTGAGCCATGTCTCCAGCCCCTAATCTTGGTTTTTGAGACAGATTTCTCTTATTGTCCTGGGACCGAACAGATAGGCTAGGTTGGTTAGCCAGCAAGCCCTAGGAATCTATCTGTTGGTCTCCATTTCCCCATGCACAGATTACAAGCATGCGTCATTGTTGTGTCTGTCTCTTTCATGGTTCTGAAGATCAAACTTGGCTTGTCGTGCTTATAAGGAAAGCACGCACTGCTCTCTGCTGACTGATCTGACCTCCGTGCTCAGAAGTGGTCTTAATGTCCTGGCCAGTGGAAGTGTAGGCTTCAGTTTGAGGAGGGGGTGTCTGAGCAGGGGCAGGTGAAATGAGGAATAGGCCATGGTATATACCATTTGGGGTATATGTGTGTGCCTGTGCATGCATGTGTGTATATGTGTCTTGAAGTTTCTGACATTGGGATTTGCGGAGTAGACATCTTCTTCTTGCTATCAG
Seq C2 exon
GAGTTTGACCTGGATGTGGTTGCCGTGGTGAATGACACAGTTGGGACTATGATGACTTGTGGCTACGAAGACCCTCACTGTGAAGTTGGCCTTATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006116:ENSRNOT00000008813:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCCTCCTCAAGTGGACA
R:
TAAGGCCAACTTCACAGTGAGG
Band lengths:
190-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]