DreINT0078090 @ danRer10
Intron Retention
Gene
ENSDARG00000038703 | hkdc1
Description
hexokinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9801]
Coordinates
chr13:22890787-22892060:-
Coord C1 exon
chr13:22891965-22892060
Coord A exon
chr13:22890887-22891964
Coord C2 exon
chr13:22890787-22890886
Length
1078 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGC
5' ss Score
5.2
3' ss Seq
ATAATAACTTGTTTTTACAGGAG
3' ss Score
8.58
Exon sequences
Seq C1 exon
GGAGATCTGGTCTGCTGGACAAAGGGCTTCAAAGCGACAGACTGTGAAGGGTATGATGTTGTGGACATGCTGAGAGAGGCCATCAAAAGACGAAAT
Seq A exon
GTGAGCAGAAAGCAAACATAGTAAAGTAGTTTTACAGATCACACTCCTACACTTAAAGCGTAGCAGCACTATCATCAATACTAATGAATTGGGTTACATTTTCATGCATTCAGAGATTTGATTTAAAACAATAATAACGATTTATCTTATTTCTAACTGGAGCACTAAAACATTTTGTTTTTTTTAACAAATAACTAACGTTACTTTTCAGTTGTGTTGCTTGATTTAACATGCCATCCTGTTTGGTAATGGTAGCATGAATTGAAACTTTGCTAATAAGTTTAGAAGCAAAGATTAACATCGCTAACCTGTTTTAAAGCATTGTTTCAATGCACTACTAGCATGTTTATCGCTTACTTTAGCACATTGTTAGCATGTTCAACTGGTTTTTTTAATAATTGTTAGCATATGCTATGCTAGTCGCTAATCTTTGCTCATGATAGATAGCTACAGTAGAACTGTTTAAATCCTGTAAGATTTACTGTTTGAAAGTTTGAACAGTAAGACAATACAGTACATAGCATACAGAGTCAGGACATCCTGAGGGTCTTAAGTTTCTCATACCAACAAAAATATAATGTAGCTTGTAGTCCTCTTATTTGATGTTTGTGATGGTGTGAAAAGCTGAATCTATACCGCACTGTGCTACATCCTAAATACTTACATACTATTTGTATCTTGCTTTCTTTTTTATATTCCTTTTAAACTGCAAATTTCAGAATTTGTATCATTTATGAAAGCTAAAATCTTATCTAATTGATGTATTCATTTGTTTGTGGTTTTTAATTGTGTATTTATTAATGAAATGTTCTTGCCTTTGAAATAGGGATTGTTGCTGACATGGCATTTAATAAAATAAATATATATTATATTATATTCCTTTTTTATAATCTGTTAAATCACTTAAATTCTTTGCTGTATTTATTTCTTATACTTTTTGTGATTAATTTATGATTCTTTAAACTTTCTTGTTCATTTAAAGCACTTTGAATTACCCTTGTGTATGAAATGTGCTATATACAGTAAACAAACTTGCCTTGCATTGATAACATGTTAACATAATAACTTGTTTTTACAG
Seq C2 exon
GAGTTTGATCTCGATATCGTAGCTATAGTTAATGACACAGTTGGCACAATGATGACCTGTGCATATGAGGACCCTAAATGTCAGATTGGTCTTATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038703:ENSDART00000056523:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCTGGTCTGCTGGACA
R:
TAAGACCAATCTGACATTTAGGGTCC
Band lengths:
190-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]