GgaINT1014874 @ galGal4
Intron Retention
Gene
ENSGALG00000021039 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr6:10451514-10451800:+
Coord C1 exon
chr6:10451514-10451609
Coord A exon
chr6:10451610-10451700
Coord C2 exon
chr6:10451701-10451800
Length
91 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGC
5' ss Score
5.2
3' ss Seq
GACTGTGACTTGTGTTCTAGGAA
3' ss Score
9.64
Exon sequences
Seq C1 exon
GGAACGCTTGTGGGATGGACAAAAGGGTTCAAGGCAACTGATTGTGAAGGGGAAGATGTTGTTGATATGCTGAGGGAGGCCATCAGGAGAAGAAAT
Seq A exon
GTGAGCTATTCTTATTTGAGCTTCCTGATGTATTCAGTTTGTGCTGCCTCTTTCTCCAGAACTCCACCGGTGACTGTGACTTGTGTTCTAG
Seq C2 exon
GAATTTGACTTGGACATCGTAGCAGTGGTGAATGACACTGTTGGGACAATGATGACCTGTGGATATGAGGATCCGAACTGTGAGATCGGCCTTATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039:ENSGALT00000006717:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAAAAGGGTTCAAGGCA
R:
TAAGGCCGATCTCACAGTTCG
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]