BtaINT0072310 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9728692-9729944:-
Coord C1 exon
chr11:9729849-9729944
Coord A exon
chr11:9728792-9729848
Coord C2 exon
chr11:9728692-9728791
Length
1057 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
GGATCTGCTGTTGTTCTCAGGAG
3' ss Score
6.99
Exon sequences
Seq C1 exon
AGCATCCTCCTGAAGTGGACTAAAGGCTTCAAGGCGTCTGGCTGCGAGGGTGAGGACGTAGTTATGCTGCTGAAGGAAGCCATCCACCGGCGAGAG
Seq A exon
GTAGGGGAGGCAGAGCACGAGGCCTGAAGGGGTCTCTGTGTACAAAAGCGGGGGGAACTGTTAAGTGCAGTTGTGCTGGTCACAGGGATAATTATTGTAGTCCTTCAGCAGTTTGTGAGTGTCCATGGTCTGTCAAGCCTTCCTCTAGGCAACTGGGGATTCAGGAATGGCCACAAGCTCTCATTCTATAAACAAACCGTGAGCTAATGTCAGGTACTTTTGTGCTATGAAGGAAATGAAGTTGGGTAAGGACAGGGTGAGTGGGGCTGGGGAAGCGCATTCTTTTAAATAGTATAACCAGGGAAGGTTTCTGAGGAGGTGACATTTGAGCAGAGCAAATAAGCCCTGCTATATAAACTGTCAGTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGAACGGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTTACCCAAACCCATGTCCATCGACCATCCAGCCATCCCATCCTCTGTCGTCACCTCCTCCTGCCCCAAATCCCACCCAGCATCAGGGTCTTTTCCAATGAGTCAGCTCTTTGCATGAGGTGGCTGAAGTATTGGAGTTTCGGCTTTAGCATCAGTCCTTCCAATGAACACTCAGGACTGATCTCCTTTAGGATTGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCCTCAGCACTCAGCTTTCTTTATATAAGCTTTGAAAGTGAAGTCGCTCAGTCGTGTCCAACTCTTTGTGACTCCATGGACTGTAGCCCACCAGGCTCCTCCATCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCGAACCCAGGTCTCCTGCATTGCAGGCAGGCGCTTTAACCTCTGAGCCACCAATAAGTTTTATACACATCTAAATCTCCCCTACATGTGTCTGAGGGAGAATATTGTAGCTCATTTGGGGATTGGGATCTGCTGTTGTTCTCAG
Seq C2 exon
GAGTTTGACCTGGATGTGGTTGCTGTGGTGAACGATACAGTTGGGACTATGATGACCTGTGGCTATGAAGACCCTCACTGTGAAGTCGGCCTCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108:ENSBTAT00000060994:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCCTCCTGAAGTGGACT
R:
AATGAGGCCGACTTCACAGTG
Band lengths:
192-1249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development