GgaINT1014867 @ galGal4
Intron Retention
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9649757-9650215:+
Coord C1 exon
chr13:9649757-9649940
Coord A exon
chr13:9649941-9650059
Coord C2 exon
chr13:9650060-9650215
Length
119 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
CAACCCCCTGCCGCACACAGGTT
3' ss Score
6.56
Exon sequences
Seq C1 exon
GTTCGGGCACCAACTGCTGCTTCATGGCCGAGTCAGACCTCTTGGAGATCGCGGGGGTGACCAGCGGGCGGATGTGTGTCAACAGTGAGTGGGGCTGCCTGGGGGATGACGGCGCACTGGACAACGTGCTGACCCCCTACGATCACCGTGTGGACCAGGAGTCCTCCAACCCTGGGGAGAGGAG
Seq A exon
GTGTGCCGCTAGAAAAGGGTCCTGGGGCTCCCCATGGGCACGCTGTGCCCTGCCATCTTGCTGCCCCAAAGGGCTGAGGGCTGTGCTCGGGGAGGGGACCAACCCCCTGCCGCACACAG
Seq C2 exon
GTTTGAGAAGCTGGTGGGCAGCCTATATCTGGGGGAGACTGTGCGGCACGCCATGCTCATGCTGGCCTCCGAGCAAGCACTCTTCATCGGGAGAAACACCTCCACCCTGGCGACCAAGGCTGTGCTGACAACCCAGCAGGTTCTGGAGATCATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287:ENSGALT00000045865:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTCAGACCTCTTGGAGA
R:
CCCGATGAAGAGTGCTTGCTC
Band lengths:
248-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]