RnoINT0070993 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10145700-10146466:+
Coord C1 exon
chr17:10145700-10145883
Coord A exon
chr17:10145884-10146310
Coord C2 exon
chr17:10146311-10146466
Length
427 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGTG
5' ss Score
-1.24
3' ss Seq
GTCACTCCTTCCGCCTGTAGGTT
3' ss Score
10.76
Exon sequences
Seq C1 exon
ACACTGGTACCAATGCCTGTTATATGGAGGAAGCGAGGCACGTGGCAGCTCTGGATGAGGACCGCGGCCGTACCTGTGTCAGCATCGAGTGGGGCTCCTTCTATGACGAAGAGGCCCTAGGGCCAGTACTGACCACCTTCGACGATGCCCTGGACCACGAGTCCCTGGTTCCTGGTGCTCAGAG
Seq A exon
GTGGTGGCCCGGCAGTGGTTTCCCTGACTCTGCTTTAGGCTGCCATATTACTGTTCTATCCCTGTTCTTCCTATCCTTCCGAGCTTGCCTTTGCCTTGGGAGGGTGGGTCCCAGGTCAGACTCAAAAAGAAAGGCCTCAGAGTGCTAGAACCCTGAGTTTTCAATCTCTGATCCTTCAAGTCAGCTCTGGCAGGATAGGAACAGCGGAGTAAAATGTCTACCTGCTTTCCTGGGTCCGCTTGCCTTTCTAAGCGGTCCCTGAGTGTAACCCAAATGGTTAGAAAGGCTAAACCCACTTGTCCTCTGGGAGGCCATTTGCCTCTGGAGTCCTCAGTCTGGGACCTCGAAGAAGATGATTTCTCTTTAAGGGTTCAAGTGGGCTGGGGGCTCAGGAAGGGCTTTGTCTAGTCACTCCTTCCGCCTGTAG
Seq C2 exon
GTTTGAGAAGATGATTGGTGGCCTTTACTTGGGTGAGCTGGTAAGGCTGGTGCTGGTCCACTTGTCCCAGCATGGGGTCCTCTTTGGTGGCTGCGCCTCTCCTGCGTTGCTGAGTCAAAACAGCATCCTCCTGGAACATGTGGCCAAAATGGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGGTACCAATGCCTGTT
R:
TCCTCCATTTTGGCCACATGT
Band lengths:
340-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]