BtaINT0072339 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39702250-39703055:-
Coord C1 exon
chr7:39702872-39703055
Coord A exon
chr7:39702406-39702871
Coord C2 exon
chr7:39702250-39702405
Length
466 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGCC
5' ss Score
1.66
3' ss Seq
GCCATCCTTCCTGCCTATAGGTT
3' ss Score
10.12
Exon sequences
Seq C1 exon
ACACCGGCACCAATGCGTGTTACATGGAGGAGGCAAGGCACGTGGCAGTGCTGGACGAAGACCGGGGCCGCGTCTGCATCAGCATCGAGTGGGGCTCCTTCAGTGATGAGGGGGCCCTGGGGCCAGTGCAGACCATCTTCGACCACACCCTGGACCATGAGTCACTGAACCCGGGTGCCCAGAG
Seq A exon
GTGGCCTAACCTTCTCTCTCGGTCCTACAACTGCTTTGCTCCACTCCCGCTCTGCTGTTCCTGTACTCTAGTCTTTAGGCCCGCGCCTCCTGTTCCCCACTTGCATCCTAGGGGGCCTTGGCCAGTCTCAACGAAGGAATGGCTCAAGGTTCTACAATGCAGAGTTTTTAACTCTTATTCCTGACTCTGGCCAGCTCCGACAGGGGTCAAGGGTTGGGAGTAGTCAAGCAAAGGGACTCCTACCTTCCTTGGGTCCTTCCAGGAGCCCCCTTGAACTTCATCTAAGCCAGACGGGGTAGTGTGGTCTGGGTAAACACCCAACTATCTCTGAGGAGGCCATTTGCTTCTGGACCCTTCAGTCAAGGACCCCAAAGAAAATGAGCTCTCTTTGGGAGTTCTTGGAGGTGGGGGTAGGAGGGCTGAGGGCTTAGGAAAGGCTCTGGCCAGCCATCCTTCCTGCCTATAG
Seq C2 exon
GTTTGAGAAGATGATTGGGGGGCTGTACCTGGGTGAGCTGGTGCGGCTGGTGCTGGTTCACCTGGCCCAGCGTGGGGTCCTCTTTGGTGGCCACACCTCCCCCGTCCTGCGAAGCCAAGGCAGCATCCTCCTGGAACACGTGGCTGAGATGGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898:ENSBTAT00000019834:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAATGCGTGTTACATGG
R:
TCCTCCATCTCAGCCACGTG
Band lengths:
334-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]