GgaINT1014869 @ galGal4
Intron Retention
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9650296-9650906:+
Coord C1 exon
chr13:9650296-9650529
Coord A exon
chr13:9650530-9650601
Coord C2 exon
chr13:9650602-9650906
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CATCCTCTTCCTGCCCGTAGGTT
3' ss Score
12.75
Exon sequences
Seq C1 exon
CAACGAGGACGGCATGGCCAAGGCTCAGGGCATGCTGGAGGCTCTGGGGCTGCAGCCCAGCGAGCGGGACTGCTGCCGGGTGCAGCAGCTGTGCCGGGCGGTGGTGAGCCGTGCCGCCGCGCTCAGTGCCACCGGGCTGGCGGCCGTGCTCAGCCACATGTGCCGCAGCCGGCAGCTGGAGCGGCTGGTGGTCAACGTGGGGGTGGACGGCGGGCTGTACCGCACCAGCTCCAG
Seq A exon
GTGAGGGGACATCGGGCTCCTGGCCACGCGATGCCTCACGCCCGGCCTTCACCATCCTCTTCCTGCCCGTAG
Seq C2 exon
GTTTGGTGAGATCCTGCGCAGCGTGGTGGGGCTGCTGGCCCCCGAGTGCGCGGCCACCCTCGTGCCTTCGGGTGATGGCCGCGGGCTGGGGGCGGCCATAGTGACGGCGGTGGCTCTGCGCCTGGTGGCACAGCGGAACAAGGTGGAGCGGCTGCTGGCCCCGCTGCGGCTCAGCCGTGCTGACCTGGAGCGCGTGCAGGCACTGATGAAGCAGGAGATGGAGCGTGGGTTGGACCGGGAGAGCAACGCTACGTCCTCCGTCCGCATGCTGCCCACCTATGTGTGCCACACGCCCGATGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287:ENSGALT00000045865:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.6=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACCGCACCAGCTCCAG
R:
CTCCACCTTGTTCCGCTGTG
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]