RnoINT0070978 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10146635-10147778:+
Coord C1 exon
chr17:10146635-10146868
Coord A exon
chr17:10146869-10147482
Coord C2 exon
chr17:10147483-10147778
Length
614 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
CACCTGGTGTGTTTGCCTAGGTT
3' ss Score
6.89
Exon sequences
Seq C1 exon
CCCTGCCACTGGGATAGCCCACGTCCACACAGTCCTGCAGGGCTTGGGTCTGAGCCCTCAGGCCTCAGATGCTGAGCTCGTGCAGCGCGTGTGCATGGCTGTGTGCACGCGAGCTGCCCAGCTCTGTGCCTCTGCCCTGGCTGCAGTCCTATCCCGCCTCCAGCACAGCAGGGAGCAGCAGACACTGCACGTGGCCGTGGCCACTGGAGGGCGAGTGTTCGAATGGCACCCCAG
Seq A exon
GTATTCCGGGAATAGGATCTTATGTGAGCGGGTAGCATGGATGTGTGTGTTTTTATAATATACATCCAGAGGGCGTTCTGGTACCCCGTGTGCGAGCGAGTGGATGTGAATGGCAGAGTGAGAATTAGTCTAGGTTGTGGGATGCCAGGAGGCACGTAAAAAGAAAAAAAACGTTTCTTTTTATGCATGCCAGGGAGAGGGGCAGGGAGGGCAGTGGATGTATGGTTGGTACCAAGGAACAGGTTTAGGACTAATTTTTTTATTAAAAATTTTTAATAAAATTCTATTAAAACCCATGGCTCTCGCTGTATATGTAGGAGAGGATGACCTTATCTGGCATCAATTGGAGGGGAGGTTCTTGGTCCTGTGGAGGCTCAATACCCCAGCATAGGGGCATGCTAGGGCAGTGAAGCAGGAGTGGGTGGGTGGATGAGCATCCTCATAGAGGTGGGGGTGGGGTGGGGTGGGGTTGGCGGAGGGGAACCGGGAAGGGGGCAACATTTGGAATGTAAATAAGTACGATAACTAATAAAAAATAAAATTTAAAATGATAAATGATAAATTTTAAATAGCGCTCAGATGCCAAGCCGAGCGCACCTGGTGTGTTTGCCTAG
Seq C2 exon
GTTCCTCTGCATCCTAAAGGAGACGGTAATGCTCTTGGCCCCAGAGTGTGATGTCTCCTTCATCCCCTCTGTGGATGGTGGTGGCCGGGGTGTGGCAATGGTGACTGCTGTGGCAGCCCGCCTGGCTACCCACAGGCGCATCCTGGAAGAGACCCTGGCACCATTTCAGCTGAGCTTGGAGCAGCTGACAGCGGTGCAGGCACAAATGCGGGAAGCCATGATCAGGGGGCTTCAAGGAGAGAGCTCCTCCCTCCGCATGCTGCCCACTTACGTCCGAGCAACGCCCGATGGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=40.0),PF0034916=Hexokinase_1=PU(28.5=57.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGCCTCAGATGCTGA
R:
CTGAAATGGTGCCAGGGTCTC
Band lengths:
348-962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]