GgaINT1015716 @ galGal4
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4564383-4565581:-
Coord C1 exon
chr26:4565389-4565581
Coord A exon
chr26:4564479-4565388
Coord C2 exon
chr26:4564383-4564478
Length
910 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GTGGGCTCTTTTACTTGCAGATG
3' ss Score
10.09
Exon sequences
Seq C1 exon
CTGTTTGACTTGATCTACCGTGAGGAGACCTTGTTTAATGTCATCAAGAGCGTGACGCGAAACGGGCGCTCCATCCTGCTGACTGCCCTCCTGGCGCTCATCCTTGTCTACCTCTTCTCCATTGTGGGCTTCTTGTTCCTGAAGGATGACTTCATCCTGGAGGTGGACCGGCTGCCGGACAGCAAAGCCCAAG
Seq A exon
GTAAGCCAAGCCATGGACTGCTGTCCTTGGTGCTTGGGCTGGAAGGGGACCAGCAGAGCACGGGTCCGTCTCTGTGGCTGCATCACTGCGTGCAATCATTGATGTGTGGTCCCACACTCTTGGGAGAGCTGGTTTTGGGGCTGGCAGAGAAGAGTCTGCCTGCACTGACATAGAGCCCTGATGCTGCAGAAAACAAGGCCTGGGGGTTGGAGGGACTGCAGAAAAGGAGGTGGGCAGATAGGAATGAATTCTGTAGCGCTGCAGAAGTCTTACTGAAACTTGAGCAAAAGATGGATGACACTGATGAAACTTGCTCTGGCTGTTAAAAAAACAAGCAGCTTGTGTGTCGATCATAACAGAGGGTTTTGGGTTAGGCTTTTACTTATCTTCTTTGCATTTGAAGTCTTTTTGGTATGCTTTTACAGTCACAGAGATAAGTTAGTGTGGAAGAAATATGCTTAGATTATTTGAATAAAGTACAGTTTTGTAATATACTTGGACTACAATACAATAGCTTGGAGATTAAAGTCAAAACATCTGGATGTTTTAAAGAGAGAATACCCTTGCAAAAGCAGCTGGTTGGTGGTTGCACCCAAGGCTCTCTTAACTTCAAAGGATGAGAATATGGTTTTTAGGCATCTTACCTGGAAAACTGGCAACTATCTCTGAACAAAGTTGGGATATCAGTGCGATGATTACCCAGCCCATGACAGGAGGGTTGGAACTAGATAATCTTTCAGGTCCCTTCCAATCCAAGCCACTCTATGATTCAAAACATAGAAAAGGCTATGAGAATGTGGATCAAGATATTTTTTTCAAGTTGAAAGCTGCAATGAGATGCAGGTGAAGAACACTTGTGACAGGAGCAAAGAGCTGACACTGACAAGGCTGTGGGCTCTTTTACTTGCAG
Seq C2 exon
ATGACCCCTTGGGGATGCAAAGGAACATGGAGACCTTCATGGAGTCCTGCAGTGGTGACAAAATTAGCTGCTCTGCTGTGCCCACTGCCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(28.3=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(14.2=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGACTTGATCTACCGTGAG
R:
CAGTGGGCACAGCAGAGC
Band lengths:
279-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]