HsaINT0083340 @ hg19
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33658694-33659496:+
Coord C1 exon
chr6:33658694-33658886
Coord A exon
chr6:33658887-33659391
Coord C2 exon
chr6:33659392-33659496
Length
505 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTTG
5' ss Score
1.23
3' ss Seq
CTCATCCATATCCCCTCCAGCCA
3' ss Score
6
Exon sequences
Seq C1 exon
CTCTTTGACCTCATCTACCGCGAGGAGACGCTGTTCAACGTCATCAAGAGTGTGACCCGCAATGGCCGCTCCATCCTGCTGACAGCCCTGCTGGCCCTCATCCTGGTCTACCTCTTCTCCATCGTCGGCTTCCTCTTCCTCAAGGATGACTTCATTCTCGAGGTCGACCGGCTGCCCAACAACCACTCCACAG
Seq A exon
GTCTTGGAGGCTTCCTCTCCTGGGCAGGTTGTGGGGAATGAGGTTGGGTCTCACAAATGTCTGGCGTCAGGACCAGGACCTGCAGCGCTTACCTCACCAGGCTCCCGTCTGCTTCTCCTCTTGGCTTCTGGGGACGTCTAGCTAACACCAGTCTGCCTCGCTCTTTTCTGGAACACACTGAGTGGGTGGGAGAGCCTTGGGTCTCTGGCCCCTAAGGAACCCCTTGCTTGAGGGCTGGAGTCCCTTGAACTGTCATTCATGTTAAACCCAGTATTTGCAGAAACTGCCCGTGTGCCAGGCCTAGGGGTACAGAGACCCCTCCCTGCCCTTAGTGTGCAACCCAGTCGGGGGCAGAAGCGTGATGACCCTTCACTGTGGCTGGACAGTGGAGGGCTGGCGATCCAGGACCAGGGAAGGTTTCCTGGAGGATGTGACACTGGGGACAGAGCCAGGGGATAAGGCCAGGCACTGGACCTCCTGATGATCTCATCCATATCCCCTCCAG
Seq C2 exon
CCAGCCCCCTGGGGATGCCACATGGAGCTGCTGCATTTGTGGACACCTGCAGTGGGGACAAGATGGACTGTGTCTCAGGGCTCTCGGTGCCTGAGGTCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-ITPR3:NM_002224:52
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(27.9=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACCTCATCTACCGCGAG
R:
CTTCCAGGACCTCAGGCACC
Band lengths:
295-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)