RnoINT0076774 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5707539-5708268:+
Coord C1 exon
chr20:5707539-5707731
Coord A exon
chr20:5707732-5708163
Coord C2 exon
chr20:5708164-5708268
Length
432 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTCG
5' ss Score
-1.58
3' ss Seq
CTTGTTGCTGTCATCTCCAGCCA
3' ss Score
7.72
Exon sequences
Seq C1 exon
CTCTTTGACCTCATCTACCGAGAGGAGACGCTGTTTAATGTCATCAAGAGCGTGACCCGCAATGGCCGCTCCATCCTGCTAACTGCCCTGCTGGCCCTCATCCTTGTCTACCTCTTCTCCATCGTGGGCTTCCTCTTCCTCAAGGATGACTTCATCCTGGAGGTGGACCGGCTGCCTGGGAACCACTCCAGAG
Seq A exon
GTCTCGGGGACTTCTGTCTGGGGTGGGCGTGTGGGGTGACAATCCACATGCACAGGTGGCAGCACCAGACAGGGCATGCTTGTTCCTCCAGGCTCCCTGCCTTCCTCCTGTTGGATTTTGGGAGGTCTAGCCTATACCAACCTGCATCTCCACACATGAATGTTAGCTCACTGCAGTCAGAAAGGTCGGCAGAGCCTTGATAGCCTCTGGCTTGAGCGGAACCCATGTAGATCTGTCATTCATACAGAGCTGGCTGTCTGCAGGGGCTGCCTGGGGGCCGGGCCCAGGGTCTCAGAGACCCTCCTACTGTGTGGTGGTCTCTGTGTGAGACAGCAGGGCCAGGAGAGGCCTCTCAGGACAGACTAGCGAGACGCTATGGTCAGACAGACAGACATTTGGACCTCCTTGTGACCTTGTTGCTGTCATCTCCAG
Seq C2 exon
CCAGCACCCTGGGGATGCCACACGGAGCTGCCACATTTATGGGCACATGTAGTGGGGACAAGATGGACTGTGTCTCTGAGGTCTCGGTGCCTGAGATCCTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(27.9=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTGACCTCATCTACCGAGA
R:
TAGGATCTCAGGCACCGAGAC
Band lengths:
294-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]