GgaINT1016111 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1135689-1136672:+
Coord C1 exon
chr26:1135689-1135854
Coord A exon
chr26:1135855-1136403
Coord C2 exon
chr26:1136404-1136672
Length
549 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
AGTGTCCCCACTCCCCGCAGCGC
3' ss Score
9.71
Exon sequences
Seq C1 exon
GTTGGAGTACAAGTACTCGCGGCTGGTGCTGAATGCGGCGGCCAAGGAGAGCGAGCTGCCGGCACCGGATAGCTGTGCCATCATGGAGGGAGAGGATGGTGAGGATGAGCTCATCTTCACCAGCAAGAAGTCCCTGCTGGGCAAGATCCGCTGCCTGGCCACCAAG
Seq A exon
GTGGGAGTGGGAATGGGAGCAGGGGGGTCCTGTAGGGTCGGAGGTGTTCCACAGGGCTGTACCGGTGGATGGGATTGTCCCAATGGATGGGAGTGTCTCATGGGGCTGACCCAAGGGATGAGGGTGTCCCGTGGGGGTGACGTTGACCCGAGGGGATGGGGTTGATCCAAGAGATGGGGGTGTCCCAGGGGATTGTCCAAGGGATGGAGAAGTCTCATGGGGATGGAGGAGTTCCATTGGGTTGGCCCAAGGCATAAAGGAGTCCCAAAGGTTGGGGTGTCCCATGAGATCGGGGTGTCCCAAGGGGATGGAAGTTGCCCGTGGGATGTGGGGGGTCCCATGGGGATGTTGCAAGGGATGGAGGTGTCCCACAGGGCTGAGCGTCCTGGGTGTGACTCGTGGGTCTACAGGTGTCCCATGGGGTTGAGTTGTCCTACAGAGGGGATGTCCGGTGTCCTATGGGGATGGATGCCCCATGGAGGAGGTGTCCCACAGGGAGGGGTGTCCGCTGTTTGTGTCCTCACCCCTCAGTGTCCCCACTCCCCGCAG
Seq C2 exon
CGCACCCCAGACGGCTTTGACTCCGTCCCCCTGAAGCCATCGTCCGGTGGCACTGACCTGGAGCTGTGAGGGGGCCGTTCTCCCCCCACCCCGTGGCCTTACGGACCCACAGAGCCCCGGGGCACTTTTGTCTCCCCCCACCCCTGGGAAAATGCCAAATACAGACATGGGGGTCAGGAGCACCCCCAGCCTGGCAGGGGGACATGGGGGGCAGCCCTGTGTGTCATGTTGGGGGCACATGTGTGGGGCAGAAGAGTGCATGATGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCATGGAGGGAGAGGAT
R:
CTCTTCTGCCCCACACATGTG
Band lengths:
346-895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]