BtaINT0081099 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34313872-34315552:-
Coord C1 exon
chr3:34315387-34315552
Coord A exon
chr3:34314270-34315386
Coord C2 exon
chr3:34313872-34314269
Length
1117 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TGTCACCATCTCTCTTTCAGAGG
3' ss Score
10.68
Exon sequences
Seq C1 exon
GCTAGAGTACAAGTACTCCAAGCTGGTGATGAATGCTACCCTCAAGGACTGTGACCTACCAGCCGCTGACAGCTGTGCCATCATGGAAGGCGAGGACGTGGAGGATGACCTCATCTTTACCAGCAAAAAGTCACTCTTTGGGAAGATCAAATCATTTACCTCCAAG
Seq A exon
GTAGGGATGATGGCCAGTGCGCTGAGGTCACCCTGGAGGCCAGGAGAAGACATGAGTCCTAGGACACTGAGACCCCCGACTGTTTAGGGACCACTGTTCTGCTCCCTACCCTCCATTCTCTTCTATCCTCCCGCCTTGAGAATCCTGGCTTCTGTCTTCTGTATTTTCACACAAATGCTTTTTCCCCTGAGGCCCAGGACTGCTCTGCACAAGGCTCCTTGTCTGCCAACATGCACTCCAGTGGATGGGCTGTTTGGGCCTTTTAACTTCCAGAAGGAGTACTGAACCACCCATGTGGTTCAGAATCAACCTCGTTCCCAAAACACAAAACAATAAACCAAAACCCTTTTTGTATTTTGGAGAGAGGGGAAGGGATGACCTCTAGGATCAACTTCCAGTAGAAGTGAGGCTCTCCTTTGGCCAGTGGAGGGTGCTGTCCCCTGGATGTCAGGCCCCTGTCCTTTGGGGGCTGAGTCACAGCTTCATCTAAGTTGTTCACTCTTGAACAGTTCTGAACTGGGAGAGCTGACTCTGGGTGGGTGGGTGAATGAGTCTGAAGCTCATAAATATAAGACAGACCACACTGTCGCTGGGCCTGGGGCAAGCAGAGAGCATTCAAGTGATTCCTCCAGGGCCAGGGCCCTCTGCAGCCCCATTCTGCCAGCACCCACAGTTCACTGCTGCCCTGACCAATTTATCTAACCTGGGTGGGGAGGGTGGCAACAGAAAAGGAAAGGAAGATGGGTAGGTGTTTACTTGGCCAAATCTCATTCCCTTTGTGCTGACCTTGCAGGGTGACTCCCTTGGCCTCCTTAGACCCTAAATGCTTTTTGTTTAACCAATAGGAGAACAGTTTACCCTGGGACACTTAGGTCTTTCTGGAACTTCTAGAGTTTGACAAAGATGCAAAGCAAGGGGTTTAAAGATATTTCTCATCCTCTGACTGACTGAAGGGAGCAAGAAGAATAGAGGCCATCTTATGTCCGTGTTTCCACGAAGCCACTGAAAGCAGAAATTTCAGGAGGGTTCTTTCTGTCACCTCTCTTCCATTTCTCTCCTTTGTTCCCCAAACTTGCCCATGTGCAGCAGCCAGCTCCTGTCACCATCTCTCTTTCAG
Seq C2 exon
AGGACTCCTGATGGGTTTGACTCGGTGCCACTGAAGACATCCTCAGGAGGCCCAGACATGGACCTGTGAGGGACACTGCCCTGCCTCACCTGCCTCCTTACCTGGACACATTACCTTGCAAGCCTGTGGCAATGTGGGTGCCACCTTCCTGCAACACCCACTGCTGGAAATCTCTTCGTTGTGGCCTTATCAGAAGAAGTTTGAATTCCAGATCTTTGTTTTTTTATAGAGTACCCAAACCTTCCTTTCTGCTTGCCTCAAACCTGCCAAATATACCCATACTTTGTTTATATATTACTCCCTTGCTTGCATCTTGTTTCCCAAAATGGACCAGCCCTCAGAGCCATAGCTTCATCTGCTCATATTTCTTATTGCTCTGGAACAAAAGTATTTCTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136:ENSBTAT00000001511:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTGTGCCATCATGGAAG
R:
GAGGCAAGCAGAAAGGAAGGT
Band lengths:
357-1474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]