DreINT0136744 @ danRer10
Intron Retention
Gene
ENSDARG00000042899 | si:ch211-163l21.8
Description
si:ch211-163l21.8 [Source:ZFIN;Acc:ZDB-GENE-041008-93]
Coordinates
chr8:23786113-23788447:+
Coord C1 exon
chr8:23786113-23786278
Coord A exon
chr8:23786279-23787446
Coord C2 exon
chr8:23787447-23788447
Length
1168 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
ACAATTCTGTTGTTTTACAGAGA
3' ss Score
8.9
Exon sequences
Seq C1 exon
GCTTCAGTATAAGTACTCCAAGCTCATGATGACAGCAGGAGATAAAGAGTGTGAGCTTCCAGCAGCCGACAGCTGTGCCATTATGGAGGGAGAAGATGCAGAGGATGACCTCATCTACCTCTCCAAAAAACCCTTCTTCAGGAAAATCAAGTCCTTTTCCAGAGAG
Seq A exon
GTAAGGACACAAGACTGACCTCTCCTTGACCATGACGTTTTGGATGGACGCTTTATACATTTCTAGGGGGTAGTTCACCCTGAAAATTCATGAGAAAACCATTCGATTAAACTAATTTACTCAACTTCCAAAAGAAAATATTTGGAAGAATCTTGAAAATCAGTAGCCATTGACTAGTATTTGTTTTCTTTATGGATGTCAATAGCTATCGGTTTCTAGAATTCTTCAAAATATCTTCTTTTGTGTTCAACAAAAAAATCAAGGTTTGGTCAACAGGGGGTGAGTAAATGGTTAGTAAATTTAGATTTTTGGGTGAACTGACTCTTTAAGGCAAGGCACTGCATGTGAATGAGTTGAAAATATAGTTTTTATTGATTACATAAAGATTTGCATACATTTTTGTATTACAGGTTTTGTAGAAAGTTATGTGTAATCATTGACTGATTTGCAAACATTTCTAACGAAAAAGTCTGAACATTGGATGAAGTAAGGTTCAACATTCTTGTTTAATTTTTTGCACATTTCAGAGTTTTGTTTTTGTTTTGTTTTTACAGAGGGGATTTCAGCAATCTATTTTATCACTCCATAATTAAATAAAAACTGCAAATAGCTAGAATTTTTTTTTGTACAATTTACATATTTAATCATTTAAATTGTATGTAAACATATTCCTAGATTTAGTCATTCATCATTTAGCTGATGCTTTTGTCCAAAGAGACATACAAATGAGAAGGCGTTTAGCGATTCAGGCAACTTTCTTCTGTAAAGTTTTTGTAAAATAGAAGGTTTATCCTGGACTCAATACTGTTAGAATCACTGGTAAACAATCAGGCAAAACATATATGAACATGTCCCTCTTTAAAAACCTGCTGAAATGGAGATTTATGGCTCAAAGCAGGAGAAAAACATGTTTTTGAGGAAGCAGATAAAATATGTGTTGTAAATGAAATCTACAGACACAAAATGATAAGTGTGTGAAGTAAGTCTATTTTACATGTTTTCTGGACATTAAACTAAAAACAACACTACGAAAAGCCCAAGAGTTTCCAAATGAAAAAGAAAAAAAATAGTGTCTTGCCTTAATGTGACAATATTTAATAACATTAAATATTAAATTAAATCTTAAAAGGGAAAGACAATTTATTGAAACAATTCTGTTGTTTTACAG
Seq C2 exon
AGAACATCTGATGGCTTTGACTCCGTTCCTCTGAAATCCTCTGCTGCACAGGAGATTGAGATGAGCTAGAACTTGTCACATGTTTGGCTGCCGTAATTCATTTAGCAGATGCTTTTATCCAAAGTGACTTACAGGAATACAACAAGCAATTCAACATAAAGAGCAAATAAATGCATTAAGTGCTCATAATTCAAAGTTTCAGGTTTAAAGTACAAGCTAGAATTAAGTCAATTAAGAAAATGTGAAAGATGAGATGAGTTTTCAGCAGTCTCTTCTGAATATTGTGAAGCATTCAGTGCTATGGAAGGGGTTGAGAAGATCATTCCACCAGCAGGGAACCGTGAAGGATCTGGAAAGTGTGTTTTTTTTTCCAACTCAGGCTTTTGAAGGAGATAGAGACTCACACGTGCGAGTAGAAGTTTGCATAGCTGTGACATTCTCGACATATTAGAACTTTTTTTTTTTTCACCAAAGAGACTGAGTACACCAATAAACCTGTGATTTTTCTTGATATTTGCCAATTCAGTCTACGTACAGGCTAAAAACGAGTGGCAAATGCAGAAAATTTAAAAATATTTTATGCTGTGAGCCTTCTCTTCAGCATTGTCAACTTTTTGATGATCGTAATGGCTTATAAAAATGTTATACAAACTTTTTATACAAATGCAATTTTGGAAAATCTACATTACAAGTGTCATTAGACCATCTTTTAAGTTTCTCTGAAGTTTTCAGTTTTTCTTGATTAACATATTTAATATGAGTTTGAGCAAACCCGATTTTCCCCCAGAATTTGATATTTGGTCAGAATATTTTTTTTTTATTGTTGAACCCAAAAATACATAGATTTTCATTTGATAGTTACACTTGCCTTAAAGCTTTTGTTTTGTAGCATTTATGTTGTGTGACATTTTTCTTCCCTTTTGGTAGGCTATTTTATTGTATTTTATGTCTTATTTGATGTATATATCTTGTTTGTGATGTTTCGTAAATAATACAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042899:ENSDART00000137820:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGGAGAAGATGCAGAGG
R:
AGAGACTGCTGAAAACTCATCTCA
Band lengths:
356-1524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]