GgaINT1016113 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1130868-1131304:+
Coord C1 exon
chr26:1130868-1130948
Coord A exon
chr26:1130949-1131198
Coord C2 exon
chr26:1131199-1131304
Length
250 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
3' ss Seq
CCTGGCCCTGTGCCGTGCAGGTG
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTGCAGAACGACCAGTGCCAGCCCACGGTGGAGGAGTCGCGCTGGATGCGCACCACGGAGAAGGGCTGGGAGTTCCACAGC
Seq A exon
GTGAGCACAGCGATGGGGTGGCACAGCGTGGGGGGGTCCTTGGGGACACCTTCAGGATCCCACACCACAGCTCCCACAAAAGGGTTCCCCACCACAGCCCCCACCCCCCCCTCGGGCCATTTGTCACCCCGGCACAGGAAGTTGCACTCTGAGGGCACAGAGGGGAGGGTGGTGGCACACTGGGGTGGGTGCTGAGCCCTCCTCGGGTACTGACCCCTGGCTGGGACCCCCCTGGCCCTGTGCCGTGCAG
Seq C2 exon
GTGGAGCTGAGCCGTGGTAACAACGTGCTCTACTGGAGGACCACAGCATTCTCCGTCTGGTCCAAGGTCCCCAAGCCCGTGCTGGTGCGGAACATCGGGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=PU(1.7=2.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACGACCAGTGCCAGC
R:
CTGTGATCCCGATGTTCCGC
Band lengths:
184-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]