BtaINT0081101 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34343931-34344700:-
Coord C1 exon
chr3:34344620-34344700
Coord A exon
chr3:34344037-34344619
Coord C2 exon
chr3:34343931-34344036
Length
583 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTCCTGTTTGTGGTTTTTAGGTC
3' ss Score
11.44
Exon sequences
Seq C1 exon
GTTCAGAATGACCAGTGCCAGCCCAATGCAGATGACTCGAGGTGGATGAAAACCACAGAGAAAGGATGGGAATTTCACAGT
Seq A exon
GTGAGTATCAGAGCAGCCCTCTCCCTAGAGACCCCAGAAAAGGGACCAAGGAACAAAGGCCTCTTCCTCCCAGTCTGGGCCTCCACCCTTCTCTCCTTGGAGGGCAGGAGCCTGACAACATGAGGATGCTGTAGTTTCTCTCGTGAGTTGACATAATATGGATGTGAACTGACTCGATCCTCTGGCTTGATCCCAAGGACCAGAGCTCTGCAGGTTTAAAGGGCCCAGTTCCTGGGGCTGGGCATGGATAAACAGAACCAGAGAAGAAAAAGGAGGGAGATTCCGCCTTGCTGTTGTCAGTATCTTCAGGTCCCTTCATTGGTCTCACCGCAGAAATGCTCATGATATATGTGATTGAGGGAGACAAGGGAGAGGACATTGAGAGAGTTGGAGGAGGAGGCTTCGGAGGAGCGAGGAACTGAGCCAAGGGGGCAGAAGGGCAATGCTGAGGAGGCGGAGGGAGAGGAGCAGAAGAGGAGCTGCCATGCAGGCTGCAACAGGAGGGGTCCCTCCAGGAGGCTGATGCAATGGACCAGCAGCATCTGTCTCTGTGAGTGAACTCTTTCCTGTTTGTGGTTTTTAG
Seq C2 exon
GTCGAGCTAAATCGAGGCAATAACGTTCTCTACTGGAGAACCACAGCCTTCTCAGTGTGGTCCAAAGTCTCCAAGCCCGTGCTGGTGAGAAACATTGCCATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136:ENSBTAT00000001511:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAATGACCAGTGCCAGC
R:
TATGGCAATGTTTCTCACCAGCA
Band lengths:
182-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]