RnoINT0000032 @ rn6
Intron Retention
Gene
ENSRNOG00000020272 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr2:211270726-211271272:-
Coord C1 exon
chr2:211271204-211271272
Coord A exon
chr2:211270832-211271203
Coord C2 exon
chr2:211270726-211270831
Length
372 bp
Sequences
Splice sites
5' ss Seq
TGGGAATTC
5' ss Score
-6.23
3' ss Seq
ACCTTATGCCCTTTTTTAAGGTT
3' ss Score
9.97
Exon sequences
Seq C1 exon
GTCCAGAATGACCAGTGCCAGCCCAATGCTGATGACTCCAGATGGATGAAAACTACAGAGAAAGGATGG
Seq A exon
GAATTCCACAGTGTGAGTACCACCCCAGCGATCTGTCCCCGGGATCCTAGAGGAGGACTCTAGTGCCCATGAGGGGGCAGTCTGTGACGTGTGATGCAGTGGTTGACAGGTTATGCTATACAGTGGCTGGTTTGCCCCTATGACTTCATCCCAGGAGCCAGAGCTTTCCAGCTTTGAGGCTGTGTTTTCTGGAAAACCATAGAAGAATGAGCAAATGCCAGTCTCCCTTACTGCCAGTGCCTTCTGGTCCTATTCTCATCTCACTGTAAGAGATGCTTCCAGTACATGATGAAGGATCAGGGAAGAGTGGGGGCGGGTTAGCAATGCCCATCTTTGTGATGAATTAACACCTACCTTATGCCCTTTTTTAAG
Seq C2 exon
GTTGAGCTAAACAGAGGCAATAATGTCCTCTATTGGAGAACCACGGCGTTCTCAGTGTGGTCCAAAGTGTCCAAACCCGTGCTTGTTAGAAACATCGCCATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020272:ENSRNOT00000027493:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]