GgaINT1016966 @ galGal4
Intron Retention
Gene
ENSGALG00000023172 | LRP5L
Description
low density lipoprotein receptor-related protein 5-like [Source:HGNC Symbol;Acc:HGNC:25323]
Coordinates
chr4:48996092-48996527:+
Coord C1 exon
chr4:48996092-48996227
Coord A exon
chr4:48996228-48996470
Coord C2 exon
chr4:48996471-48996527
Length
243 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTTCTCTGTGGTCTGTGCAGGAG
3' ss Score
8.87
Exon sequences
Seq C1 exon
GACCTCAAGCACTGCTTCCACCCGAGTGCTGACGCTGTACCACCGTGAAAGTGACCCTGAGGAAGAAGATGAGGAGGAGGAAGAGCTTCCACCCAAGAGTGATACCTTTGTGAACGAAGCCTATGACGGGAAAGAG
Seq A exon
GTGAGCAGGCCCTGCTCAGGACCCTCCTTGTAAAATCACAGAATGGCTTGGGTTGTAAGGGACATTAAGGCACACCCAGCTCCAACCACCTGCCATGGGCTGGTTGTCCCCCACTGGATCAGGCTACCCAGGGTCCCATCCAGCCTGGCTGCTCTGTCCATGACCTCTGTGCCAGGGTGCAAGCTGGGCCCAGGGAGGCTGGTTCAAACCCGTTCCTAATTCACTTCTCTGTGGTCTGTGCAG
Seq C2 exon
GAGCTGCCGACCCGGCTTGGGAAGGGACCATCTCGCCCCAACACTGTACTTCCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023172:ENSGALT00000037928:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCAAGCACTGCTTCCAC
R:
GAAGTACAGTGTTGGGGCGAG
Band lengths:
188-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]