MmuINT1014697 @ mm10
Intron Retention
Gene
ENSMUSG00000109372 | Gm19410
Description
predicted gene, 19410 [Source:MGI Symbol;Acc:MGI:5011595]
Coordinates
chr8:35817311-35818047:+
Coord C1 exon
chr8:35817311-35817410
Coord A exon
chr8:35817411-35817962
Coord C2 exon
chr8:35817963-35818047
Length
552 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTTCAACTCTCTTCCCACAGGAA
3' ss Score
11.99
Exon sequences
Seq C1 exon
AACATCATCAAGAAATTTGGACTATGATAAAGAAAATAACCAAGAGGAAGAAAATCTAATGAAGAGTGAGACTTTTGTCAACGAAGTCTATGATGACCAG
Seq A exon
GTATGCGGAGGGAGCCAGGGAGGTTTATCTCAGGAAAAGAGGTGGTGAGGCACGCTTAAAGAATGAGATTGTGGGGCCTGGAGAGATTGCTCAGTGGTTAAGAGCACTGATTGCTCTTTCAGTAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCTTCTGTAATGGAATCAGATGCAGTCTACTAGTGTGTCTGAAGACAGCTACAGAACTCATTTACATAAAATAAATAAATCTTTTAAAAAGTGAGATTGTGAATAGTCCTAAGTGGGCAAGTGTGGCTGTAATTTATAGTAAACTTCTGCTTTCACAGTCTTTGGTCTTCAGCTATGATTTGGAGAATCAAAATAAAACATGCGTGAAATAGACATTTCAGTAGCATGCACACAGGGCAAATGATATTGGGAGTGGGGTAGGCTGCTATAAGGATTTGAGTTACCCCAAAAACGTAGGTACCCTAACCCCATGACCTCTACTAACATATTTAGTTCCATTAACTTATTTTCTTGTTTGTTCTCTAATTTCAACTCTCTTCCCACAG
Seq C2 exon
GAATCCTTAACCTCGTTACAAACTGAATGACCTCATTAACAGAAAAACAGAGCTGAAACATTTAAATAAATGCTGCTTGAATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109372:ENSMUST00000207505:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCATCAAGAAATTTGGACTATGA
R:
AGCATTCAAGCAGCATTTATTTAAAT
Band lengths:
184-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types