RnoINT0002606 @ rn6
Intron Retention
Gene
ENSRNOG00000059081 | AABR07026032.3
Description
NA
Coordinates
chr16:59997072-59997666:-
Coord C1 exon
chr16:59997567-59997666
Coord A exon
chr16:59997181-59997566
Coord C2 exon
chr16:59997072-59997180
Length
386 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ACTTCAACTCTCTCCCACAGGAA
3' ss Score
11.36
Exon sequences
Seq C1 exon
AACATCATCAAAAAATTTGGACTATGATAAAGAAAATAACCAAGAGGAAGAAAATCTAATGAAGAGTGAGACTTTTGTCAACGAAGTCTATGATGAGCAG
Seq A exon
GTAAGCCGCAGGAGCCGGGGAGGTTTATCTGAGGAAAAGGGGTGGCGGGATAGGCTATTAAAAAGTGATTGTGAAACATCTAAGCTGGGTGAATGAGGCTGTAACTTATATTAAACTTTTGCTTACACAGTCTTTGGTCATTAGCTCTGATTTGGCGAATTAAAATAAAACATGCATGAAATAGTGGCCTAGACATTTCAGTAGCATGCACACGGGGCTAATGATATTGGGAGTAGGGTGGGCTGCTGTTAGGATTAGAGTTACCCCCCAAAACTCAGGTACCCAATCCCCATGAACTCTACTAACGTCCTTAAGTTCCACCAATGGATTTTCTTGGTTTGTACAAAGACAGTGTTATGTTCTCTAACTTCAACTCTCTCCCACAG
Seq C2 exon
GAATCCTTAACCTCCTTACAAACTGAATGACCTCATTAAAAAAAAATGAGCTGAAACATTTAAATAAATGCTGCTTGTCTACTCCCTTGTATGATGTCTTAACTTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059081:ENSRNOT00000088948:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]