GgaINT1016969 @ galGal4
Intron Retention
Gene
ENSGALG00000023172 | LRP5L
Description
low density lipoprotein receptor-related protein 5-like [Source:HGNC Symbol;Acc:HGNC:25323]
Coordinates
chr4:48985988-48986448:+
Coord C1 exon
chr4:48985988-48986107
Coord A exon
chr4:48986108-48986322
Coord C2 exon
chr4:48986323-48986448
Length
215 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
AGAAATGCCTGTCCCTGCAGACG
3' ss Score
7.41
Exon sequences
Seq C1 exon
GACGAAGCTGCTTTGTGCGCAATGGGGGCTGCGCAGAGTCGTGCACTGACACACACTGGGGTGTGCAGTGCTCCTGCGGGTCTGGCTGGGTGTTGCAGGCTGACGGGCAGAGCTGCGCTG
Seq A exon
GTAAGGAGAGGTTGGGGTGCACATGCTGCAGCACCAACAGTGAGGATGCCCCGGAGACATCCCTACTCTTGCCCACATGCCGTGTCTGGTCCTGAGAAGGCTGCTTGTGAGGCATCACTGGGAGTGGGTGGGTCTGGGAAGCAGGCATCTGGGTGGGCAATGGTGAGGTCTGGAGGGTACTGGCTGTGGGCTGCCAGAAATGCCTGTCCCTGCAG
Seq C2 exon
ACGTGGATGAGTGCTCCCTGGAGTACAGCCCCTGTAGCCAACTGTGCAGGAATACGCCAGGAACTTTCAGCTGTGCCTGCCTCGAGGGCTACCTGCTGCGACACGGCACCTTCTGTGAAGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023172:ENSGALT00000037928:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=87.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAAGCTGCTTTGTGCG
R:
CACAGAAGGTGCCGTGTCG
Band lengths:
237-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]