GgaINT1017315 @ galGal4
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:555646-556021:-
Coord C1 exon
chr17:555907-556021
Coord A exon
chr17:555822-555906
Coord C2 exon
chr17:555646-555821
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
GCATCTTTCTTCCTCTGTAGTGA
3' ss Score
8.16
Exon sequences
Seq C1 exon
ATTGTCTTTGAGATCACCTCGCGGATGTGGCCGATGGACGGCACCGTGGCACTGGATGATATTGAGTACAGTGCCACTGGAGGCTGTGACTCCAACCTAGAGGCCCCAGGGAAAG
Seq A exon
GTGTGGGTCATCCCCAACAACAGCGTCACACATTCTTTGTGACCGTGGTCCCTGCAAACCTGGCGGCATCTTTCTTCCTCTGTAG
Seq C2 exon
TGAAGTCTTCCAGCAGCTTTGTGGCAGAAGTGGTGGTCGGCCTGCTGCTGGCTGTCATTGTGCTGGCACTGGTGGCAGCTGGTGGCCGGTACTGGCTGAAGAGGAGAGCGCAGGAGAGCGGGATGGCCATGGAGAGCAACACTCCCCAGGGCTTCGACAACATCACTTTTCAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000040444:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(18.1=76.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTCCAACCTAGAGGCC
R:
GTGTTGCTCTCCATGGCCATC
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]