GgaINT1017323 @ galGal4
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:561058-561564:-
Coord C1 exon
chr17:561479-561564
Coord A exon
chr17:561217-561478
Coord C2 exon
chr17:561058-561216
Length
262 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
CTGCCACCACCCGGCCCCAGCTC
3' ss Score
3.77
Exon sequences
Seq C1 exon
GCTATTTTCTCCACACCGTTGCTGGGGGGGCTGTCAGCGTGGCCAGGCTGAGCAGCCCCACTTTCCAGGCCACCAACTCCTGCTCC
Seq A exon
GTGAGTCACTATGGGCCCTTATGTGCAGGGCAGGGGACAGCAGCCCCACGGGCATGGTGGGGGTGAGGGACAGGGACCCCTGCATGGGGTCAGTGCTGCCACGGCTCTTTGTCTGGGGAGGACGGTGGGTCTAGGGGTGGTTGGTGGCATCTCCAGTACCTGGTGGGAGCACTAAGCTTCTCCAGCCCTATGTGTGAGCAACTCATGGGGCGTGGGGGCTTTGTGCCCCTGCTCAGCCCTCACTGCCACCACCCGGCCCCAG
Seq C2 exon
CTCGTGCTGTACTGCCATCTCCATGGCTCGGCCACCAGCAGCCTCAGAATCTCCTATGTGATCAACTCCACCGAGCACCTGGTGAGAGAGAGGACAGGGGACACAGGCAGCTGCTGGGTCCGCGAGCGAGTGGACTTCAACCTGAAAGAGAGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000040444:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(18.4=100)
A:
NA
C2:
PF0062918=MAM=FE(34.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATTTTCTCCACACCGTTGC
R:
TTGAAGCTCTCTTTCAGGTTGAAGT
Band lengths:
244-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]