GgaEX6014700 @ galGal4
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:560393-561564:-
Coord C1 exon
chr17:561479-561564
Coord A exon
chr17:561058-561216
Coord C2 exon
chr17:560393-560477
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGCCACCACCCGGCCCCAGCTC
3' ss Score
3.77
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTATTTTCTCCACACCGTTGCTGGGGGGGCTGTCAGCGTGGCCAGGCTGAGCAGCCCCACTTTCCAGGCCACCAACTCCTGCTCC
Seq A exon
CTCGTGCTGTACTGCCATCTCCATGGCTCGGCCACCAGCAGCCTCAGAATCTCCTATGTGATCAACTCCACCGAGCACCTGGTGAGAGAGAGGACAGGGGACACAGGCAGCTGCTGGGTCCGCGAGCGAGTGGACTTCAACCTGAAAGAGAGCTTCAAG
Seq C2 exon
GTGCTGATCACGGGGGAGGCGGGCAGCGGGGGCTCCGTGGCTGTGGATGACCTGATCCTGTCTCCGGGCTGTGTGCTGCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'12-18,'12-17,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(18.4=100)
A:
PF0062918=MAM=FE(34.2=100)
C2:
PF0062918=MAM=PD(16.4=86.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATTTTCTCCACACCGTTGC
R:
GCACACAGCCCGGAGACA
Band lengths:
162-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]