MmuEX6099574 @ mm10
Exon Skipping
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25567859-25568546:-
Coord C1 exon
chr2:25568458-25568546
Coord A exon
chr2:25568185-25568358
Coord C2 exon
chr2:25567859-25567943
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGAGATTTCTTCTGTTCCAGTTC
3' ss Score
7.86
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GCTTCTTCCTCATCTCTGTGGCCAAGCCTGGCACCACTGCTGTCCTCTACAGCCCTGAGTTCCAAGGCTCAGTCTCCAACAACTGCTCG
Seq A exon
TTCACCTTCTATTACTACCTGCACGGGTCTGAGGCCAGCCACTTCCAGCTGTTCCTGCAGGCACAGGGGCTCAACACCCCCCAGGTCCCTGTTCTACTTCGAAGCCGCCATGGAGAACTGGGGACAGCCTGGGTCAGAGACCGGGTTGACATTCAAAGTGCCCATCCATTTCGG
Seq C2 exon
ATCCTTCTAGCTGGGGAGACGGGTCCAGGAGGCGTCGTGGGCCTAGACGACCTTATCATGTCTAGCCACTGCATGCTTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941-'22-18,'22-17,24-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(18.7=100)
A:
PF0062918=MAM=FE(36.8=100)
C2:
PF0062918=MAM=PD(16.1=86.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTTCCTCATCTCTGTGGC
R:
GGAACAAGCATGCAGTGGCTA
Band lengths:
172-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types