DreEX6083730 @ danRer10
Exon Skipping
Gene
ENSDARG00000087633 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr21:14703255-14705158:-
Coord C1 exon
chr21:14705058-14705158
Coord A exon
chr21:14703419-14703574
Coord C2 exon
chr21:14703255-14703345
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCTTTACACCTTGGTTGCAGATG
3' ss Score
6.68
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GACGTTTCCTATATGTTACCAAGCCGAACTTCACTGCGAGTGATTGGACGACTTTTCAAAGCCCTCCTCTGGCACCAACTAATGAGACACATCCTTGTCGG
Seq A exon
ATGGTCATGTACACACATCAGTTTGGCCGAGTGTCAGGTGGGCTGTCTGTGTTGGTGGCAGAGAGGCAGTTTTATCCTGTATGGAGGCGTGGAGGTGCTCTTGGGGACTTGTGGGTGAAAGCCGAGGTGGAGTTTGTCGTCAACAGCACGTTTCAG
Seq C2 exon
ATTCTGTTTGTTGCAGCCATTCGAGACCAACCGTATGGAGGGATTGCTGTTGATGATATTGTATTGTCCCCTGGGTGCATCTTATCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087633-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(22.4=100)
A:
PF0062918=MAM=FE(34.7=100)
C2:
PF0062918=MAM=PD(18.4=87.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCCTATATGTTACCAAGCCGA
R:
AGATAAGATGCACCCAGGGGA
Band lengths:
186-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]