RnoEX6015874 @ rn6
Exon Skipping
Gene
ENSRNOG00000016584 | Mamdc4
Description
MAM domain containing 4 [Source:RGD Symbol;Acc:708583]
Coordinates
chr3:2791086-2791942:-
Coord C1 exon
chr3:2791854-2791942
Coord A exon
chr3:2791590-2791763
Coord C2 exon
chr3:2791086-2791170
Length
174 bp
Sequences
Splice sites
3' ss Seq
CAGCCTTTCTTCTGTTCCAGTTC
3' ss Score
9.54
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GCTTCTTTCTCGTCTCTGTGGCCAAGCCTGGCACCACTGCTGTCCTCTACAGCCCTGAGTTCCAAGGCTCAGTCTCCTACAACTGCTCG
Seq A exon
TTCACCTTCTATTACTACCTGCATGGGTCTGAGGCCAACCAATTCCAGCTCTTTGTGCAGGCACAGGGGCTCAACACCACCCAGCCTCCTGTCCTACTCCGAAGCCGCCATGGAGAGTTGGGGACAGCCTGGGTCAGAGACCGGGTTAACATTCAAAGTGCCCATCCATTTCGG
Seq C2 exon
ATCCTTCTTGCTGGGGAGACTGGTCCAGGAGGCTTCGTGGGCCTAGACGACCTTATCATGTCCAACCACTGCATACTTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016584-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(18.7=100)
A:
PF0062918=MAM=FE(36.8=100)
C2:
PF0062918=MAM=PD(16.1=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCTCGTCTCTGTGGCCA
R:
TGGAACAAGTATGCAGTGGTTGG
Band lengths:
170-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]