DreEX6027625 @ danRer10
Exon Skipping
Gene
ENSDARG00000093629 | si:ch211-106h4.4
Description
si:ch211-106h4.4 [Source:ZFIN;Acc:ZDB-GENE-070705-14]
Coordinates
chr2:31615193-31617898:+
Coord C1 exon
chr2:31615193-31615358
Coord A exon
chr2:31617391-31617612
Coord C2 exon
chr2:31617720-31617898
Length
222 bp
Sequences
Splice sites
3' ss Seq
CCAACCAATAATTGTTTCAGAGG
3' ss Score
3.43
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ATGTGGCAGAGAAAGGGATCTCAGGGGAGTGAGTGGCAGATGGCTCAGAGTTATGTGAAAGTGACACAGGTTCATCAGATATTAATTGAGGCTTCAGTCGGAGGACTGTCTGGACACATTGCTATAGATGATTTATCCATCACTGAAGGTGCCTGTGCCCCCACAG
Seq A exon
AGGGTTTTTGCAACTTTGAAGAAGGAGACTGTGGTTGGACACAACAGGCTGATGATGACCTGAACTGGATCCGAGTTTCAGGAAATGATGTCAAATCTAAATCTAGACCTGGTTTCGACCATACAACTAACACAGCAAGCGGACACTACTTTTACATGGAAAGCACACCTGGTCAATTGAAAGGAAGTAGTGCTATAATGACATCCCCTGTGCTTCAAACAG
Seq C2 exon
GGGATGCCAAGTGTCTCCAGCTGTGGTATTACATGGAGGGAGAGGGTACTGGTACCCTAAATGTGTATCAACAGTTCTCAGGCAGTTCTCGGCCCCTGCTGGTGACGCAGTCTGGGGAACAAGGTGAACTATGGAGGTTTGCTCAGAGCCCTCTGACTTTCTCTGAGTCAAACTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093629-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.131 C2=0.033
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(33.3=94.6)
A:
PF0062918=MAM=PU(44.4=94.7)
C2:
PF0062918=MAM=FE(41.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCAGATGGCTCAGAGTT
R:
ACTCAGAGAAAGTCAGAGGGCT
Band lengths:
303-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]