BtaEX6047670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021550 | MAMDC4
Description
Bos taurus MAM domain containing 4 (MAMDC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001143873]
Coordinates
chr11:106330096-106330781:-
Coord C1 exon
chr11:106330693-106330781
Coord A exon
chr11:106330436-106330609
Coord C2 exon
chr11:106330096-106330180
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCGTGCTCGGCCCCTGCTAGCTC
3' ss Score
3.63
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GCTCCTTCCTCGCATCCGTGGCCGAGCCCAGCACCCCAGCGGTCCTCTCCAGCCCCGAGTTCCAGGCCTCGGCCCCCCACAACTGCTCG
Seq A exon
CTCGTCTTCTATCACTACCTGCACGGGTCTGAGGCCGGCTGCCTCCAGGTGTTCCTGCAGACGGCGAGCCCTGCGGCGCCCCAGACCCCCGTCCTGCTGCGCAGGCGCCATGGGGAGCTGGGGGCCGCCTGGGTCCGAGACCGAGTTGACATCCAGAGCGAGCACCCCTTTCGG
Seq C2 exon
ATCCTCCTGGCTGGGCAGACAGGCCCGGGGGGCGTCGTGGGCCTGGATGACCTCATCCTGTCCAACCACTGCAAGCCAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021550-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.086 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(18.7=100)
A:
PF0062918=MAM=FE(36.8=100)
C2:
PF0062918=MAM=PD(16.1=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTCCTCGCATCCGT
R:
GATTGGCTTGCAGTGGTTGGA
Band lengths:
170-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]