GgaINT1017717 @ galGal4
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56238260-56241378:+
Coord C1 exon
chrZ:56238260-56238380
Coord A exon
chrZ:56238381-56241214
Coord C2 exon
chrZ:56241215-56241378
Length
2834 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTAATTCTTGTTTATGGTAGGTT
3' ss Score
7.41
Exon sequences
Seq C1 exon
GGTGCTGATTGTGGTACTCCTTGTCTTCCGGGTACATATGGAGTAAATTGTTCTTCTGTCTGCAACTGTAAAAACGAAGCCATCTGTTCATCAGTAGATGGTTCTTGTACCTGCAAAGCAG
Seq A exon
GTAAGTATGACTTCAGATTAATATTCTGTAATCATAAAATCAAGTTGAGTTTTTGGAGCTGAGAAGAAACAACATATTTAATAAACAGCAGGCCAACTATAAGGCCATATATTATTCTCTATGCTTCTGCTGCAGTGGAAGGTGAAAAATGGGAGAGCATCTGCTCAGGGAAGAGGACACATACTTTGTATTTATCTGAAAGAGTTGGATATTGTGGCTGGGTGAATTACTAGTATTTATTTACTCTGAGATGGGCTGCCACTTGTAGGGCTAGGATTTGCTAGAATGACTTCTGGCAGTTTACGTGTTGTTAGGCTTCCTAGCCAAAGCAGCCCTATTTCTGCTTCACCTGGATGAGCACCAGCTCTGTCTACCACACTCTGTACCACAGAGACAGTTATTTTTCTGCCATTTTAACACTGATGTTGGTATCTCCCACTAAGTTATTCATTGGAATGTTATTTTTCTCAGTGTTTCCCTTACAAAACTTTGCCTAACTCCATTCCCAACCTCAAGACACCATTGGCAGTGCTGTCTACTTTTCTCTGCTTCCACGTGTAATTTTCTGTATCTCCCAGCAATAGTGTGAGAGGACTCACAGGGCTCTTCAGCCCCTCTGGCCAACACTTTCCTGCCAACAGTAATTTTGATGGACAGCATACCTCCACCAGACACTGTGTGCCTGTCCACCTCTACATCTCCCAGCAGCATCTAGCTTTGGGAGGAACAGAAATACCTCAGGTACCCACAGACAAGGTTTGCAGAGATCTTTTCACATGTAAAGATCTGCAGGTCTACATGAGTTCCTGTTCAACCAATTATAATACTAAGCTCCATTGAAAGATCCCTTCCTGAAATACACACTGAGGATCTGCTCTCTTTTTCATTTCTGCTGTAAGACAGTATTTAGAAGGCAGCATCTCTCAGCTGTGATGCTGGATTACTGAGAAGAGATGGGGCAGGCTGCTGAATACTCCCAAGCAAATCCTTTGCCCAGTTTATGTTTTCACACACTCTAAAAATGTTGGAGGGGCTGGAGGGGACATCAAAGCTCACTGAACCCCAACCCTGTGCTGTGGGCAGGGCTTCCCCCCACCAGCTCAGGCTGCCCGGGGCCCCATCCAACCTGGCCTTGAGCTCCTCCAGGGATGGGGCACCACAGCTTCTCTGGGCAGCTGTGCCAGGGCCTCACCGTCCTCTGAGCGATTAATCTTCCCATAATATGTAATCTAAATCTCCCCTCTTTTAGTTTAAAAGCATTCCCTCTTGTCTTATCACTATCATACTGTTTAAAAAGACAGTCTCCTACCTGTTTTTAAGCCTCCTTTAAGTGCTGAAAGGCCATAATTAGGTCTCTCCAGGGCCTTCTCCAGGCTGAACAAGCCCAGCTCCCTCCACCTCTTTTCATAGGAGAGGTGCTCCAGATCTCTAATCATGTCTCCTTACATCCTTTCCCTATTAACTGAAGATATTTTCTGCAAGTTTAATAACTCAGGTGCCCAGTGCTTTGGAGGTTGGTCTGACCCAAGTAAAACAGCAATGAAAATCCTACAGATTTCAGTGAAATGAGAATACCTTCCAGTTTTCACATGTTGCATATAACTACAGCTTCCCTGCTTTGCTCCTTCTACAAAAATTCTTCCTCTGCTTTTTGAATTAGTAGTCACATTGCTTTTCAGTCACAATATTTAGAAACAAGGCAGCCCTGTAGCTCTGAGAAAAGCAGGTTAGCCTGGGTAAATCAGCATGCGTTAGGAAAATGTAACCTGTCTGCTACTGAAAGATTCCAACTCTGACATTATTTGCCTCTTTTAACTGTGCTTATATTATGGGAAGCTCTTTAGGGAGACAGAGAAGGAAACTTCAGAAAGCCTTGAAAAACACTGGAGAGAAAGGGTCTCAATTATCTAGCTATTGCAGTGTAACATTTTTTCCTGAAATGACCCCTAAACTCTGAAGTTATCAATCTAGGACACGAGGCAGCTCTATTTCAATACATTTGTTTTGCATAGTGTATTGATTGTACTCTCTGCTGAATTATTTTTCCCTTCACTTAATGTAAACAAGGTACAAAATTAGAAACTTGGCTTGTGTCATTGCTGATGATAACATGACCGGCTCACTTGGCTTCTGTCATACCCAGTAGTTGATCACATTTTTGAAAACCTGCTTATATTTCTGTTTATCCAGTGCACAGTCTGCGAATCACTGCTATCAGACATAATCAGTGGTGAATGCTACATTTCAGTGACACTTTCCATTACATTCTATTTTGTGTTTGGAGAGAAGTGCAGAAATCTACAAGGTCTTCTGAGCATTCTTGGAGAAATCCAGCTTGTGCACTACTTTACTGTTGTGCTTTCCATATTGTTATATCTTTTCTTTGGGGGGATGTGGTGAGGAGGAGAATCTAAGATTTCTGTTAAAAACACATTGTAGAACTGTCTATATTTAATAATGGCACAAGAACTATGAAAACAGCAGCTTAAATGAAAAGATCATAATTTTTTTTCAGGCAATCCCTTAAAACTTTGAATACAGTTAGTGCTTCTCAGCAAAATTTCAAGGTGTCTATGTTTTCCCTTCAAATCTCTCATCAATAGCTCCAATACATTGGCATTGTCTGCAAAGTATGTGCTTCACAGATGCTACAAGGTGCCCTTCTGCATCTTTGTTCAAATCCAGACAAATTCTCAGCTGAAATAGTAATTCTATCCTACAGTGATTTTGTGCGTCTCAGAGGTTACAAATGGGAGGTGGAGGGAAATGTGTGCTCAGTGAGGAGTTGGAGGAAAACCTGACTAATTTGTCCCCTTAATTCTTGTTTATGGTAG
Seq C2 exon
GTTGGCATGGTGTAGACTGTTCAATCAATTGTCCCAGCGGTACCTGGGGACTTGGCTGCAACTTAACTTGCCAGTGTCTTAACGGAGGGGCTTGCAATGCTCTAGATGGAACCTGTACCTGCGCTCCGGGCTGGAGAGGAGAGAAGTGTGAACTCCCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=7.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]