MmuINT0097607 @ mm9
Intron Retention
Gene
ENSMUSG00000024593 | Megf10
Description
multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
Coordinates
chr18:57420765-57421811:+
Coord C1 exon
chr18:57420765-57420885
Coord A exon
chr18:57420886-57421647
Coord C2 exon
chr18:57421648-57421811
Length
762 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTATTGTCCTTGTCATGCAGGCT
3' ss Score
7.73
Exon sequences
Seq C1 exon
GGGACTGACTGCTCTACTCCGTGTCCTCTGGGACGCTACGGGATAAATTGTTCTTCTCGCTGTGGCTGTAAAAATGATGCTGTCTGTTCTCCTGTGGATGGATCATGTATCTGTAAGGCAG
Seq A exon
GTAAGAGTGTGCCTGTGAATCTTTTATCTGGTCCTGTTACCTCCTAGAGTCACTGGAAGGGCACCCCGACGGGGGCTCTAGTTCTAAATTTACTAAAATCATAAAATGATGGCCTCAGCATCCCTCATCCTTCCCGAGTCCAGAAAAGAAACGCAAACTCGGTCCTCTCTGAAGTTGTTGCCAGCTTTCAAAGTCTGAGTCCATGATTTTGGGAAGGGTAAACAAGCAGACGTGTCTATGCCCCCAAATGGCCCAAGTTGGAATTGTGACAAGCAATATAGCCAGCACAGATTTTATGTGTGCCACAGAACTTGTCCTCCGTAGATGCAGCCAGGATCTTGTAAACACATTTTTCATACTTAATGGTTATTGCTTCAAAGCTGGGGCTAGTCTTCCAAGAACAAGCCTTCCATTTCCTCTCATATAAACAGGCAAAGCTTATTATTCTACCCTGAGCATCACAGCACATTAAAGTTGACCTCACTCCACATCCTTTCCCAGGAGCCCATGGGATGCTTCTCAGCATTGGCATCCCTGACTGATCACAAGGCACAGTTGGCTGTTTGGTTCCTTGGGGGTTCCTTTTCATTTCTGGTCGGTCAAGGCCTTTTGTGGCAGAGCCAAGGCTGTCTGCTACTGCTGGGACTGGGGCTGTCATGCATCTCCAAGATATCTGGTACAGGGAGACATGGCTTGGAAGGGCTCAGCGAAGCTCCCTGTTGCCTTTGTTTCCTCACACGCTCTATTGTCCTTGTCATGCAG
Seq C2 exon
GCTGGCACGGGGTGGACTGTTCCATCCGCTGCCCCAGTGGCACATGGGGCTTTGGCTGTAACCTAACGTGTCAGTGCCTCAATGGCGGTGCCTGCAACACGCTGGATGGGACCTGCACCTGTGCGCCCGGATGGCGAGGCGCGAAGTGTGAATTTCCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024593-Megf10:NM_001001979:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PU(46.2=14.6)
A:
NA
C2:
PF126612=hEGF=PD(46.2=10.9),PF079748=EGF_2=WD(100=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGACTGCTCTACTCCGT
R:
GCAGGGAAATTCACACTTCGC
Band lengths:
281-1043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: