GgaINT1017999 @ galGal4
Intron Retention
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:3978988-3985536:+
Coord C1 exon
chr27:3978988-3979095
Coord A exon
chr27:3979096-3985437
Coord C2 exon
chr27:3985438-3985536
Length
6342 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCCTCTGATTTCTTTTGCAGAGT
3' ss Score
11.67
Exon sequences
Seq C1 exon
AAGACCTCACGGCACTCTGCAGGCAGCTCCTTCATTGCTGGGAGGAGGAGTCGCTCCACGTCCCCCACCCAGGAGAAGCACGTGTCCCACCACGACAGGCCAAAGAAG
Seq A exon
GTGAGATGGGTGCAGAGCCCTCCGTCCCCAGGCAGGGCGATGGAGGTGAGGAAGGGGAAGAGAGCACAGGGAGCACGGATGGGACCCTCGGGTGGGCGCTGCAAAGAGCTCTGCGCTCAGATCTCAACCGTGGGTGGGTTTGGGGATGGGAACCCAGAAATGTGCGTGCAAACGGAGCGTGGGGAATGGGAAGCCAGGTGGTGTGTTTGGATTATAGGTGTCCCGACGGAGCACACCCACAAAATGCACAGCTTTCCCATCTCTGTGGTGGCACATTGAGGTTGTGCTGTGGGTTCCACCCGCAGAGCGGAGCCCTGGGAGTACTTTGAGCTGTGATCTTAAACACAAGAGCTCGATAAACTGGGGGTCATTGTCCTCAGTTCCCAGATCCCAACTTATAGGGGACTGGTGTGTTAACCACGCTTTGGCCAGCAGCTTAATTGCCAGCAACAGCACCGCTTACTATAGCATAGGTGCCACCTGCTTCAAGTCCACTCCTGCAAACAACTTACATGGGCCAGACAAGTGTTTAGAAGGGCACTGCGTGCCAGATCTGATGAGTGCGAGCGCTGTTTGTTTAACTGTGCTGGTTAAGGTGTACTCATCAAAACTGCTGCAAGGTTACGGGCCGTGTTAACAGCACGCCGGGGTTCATCATTAACCAACGGAGCCACGTGATGGAGGTTTGTATTTCAAGGAGAAACAGCAGTGAGCACAGAGGGCAGAATCCCAGCAGAGCTCTGGCTTTTCCCCCTTTGCACCCCCAAAACGGGGGTGCAGAATCTGCAGTGGGAATAAGATAGAGGGGGGGGGGGGAATGCATTCAGTGCTGTCAGTTTTTAATCCTGCGTGGGCCAGGCAGTGGTTTGTTTTTTTTTTTGCTTGGAAAACCCCAGAATTACTCCAACAGATGACCTCTGTGTGTTTTTTGCTGTGGTCGAAAGCCAAATGATGCCGTTGTGATGTGGTGACCCGATGGGAACGGCACCGTGAGCTTTCTAAGCCCTGCCCTCGGCGTGGGGCTGCCCGCTTGTCTCCATGTGTGTGCTCTCCCCCCTTTGCAGTTGGCATCCTCAGCATGAATAAATGATGCCGAGCGGGTAATCGCGGCGACCCACATCCAGCAGCAGCCCTATGTCGTGCCGGTGGGCTGCGTGGTGGATCCCAGCCCAGCTTTCAGAAGCAATGTGGCCGTGGTGAATGCCTGCTGGCACCCTGCTGGCAGGCTCAGCTGAGAGCCCATAAGCTGTGTGGGCAGGAAAGCCGTCTCCCTCTTTATTTACAGAGGTTATCCTTCAATATCCAGCTTGAAACGCTGCCCACCGTGCCCATGAGGTGCTTGGGAAGCTTGCCCAAGCCTACCTGAGATGTGTGCAAACAAAGCAAGCCTCACTTCCCAGGTCTGCACGTACCCAGTGACACCGAGTCAGTCAATTTCCCACTGGTGACAAGGCTCAAACATACTGGGGGTGTTTACTCCTCCTGTGTGTGTGCTCAGCTGCTGGGAGGGGAGGAGGAAGGAGAAGGAGCATCTGTGCATGGGCTGGGAGGTTGGCACGGGGCGAAACGCTGCGCTGGAACGTGCTATTTTTAGGCAGGAGCAGCCGGAGGGGTGGTGGGAGGGCAGGGCTGGGTGATGGGCCGGGGTGATAACTGACAGGGCAAGGCTGGGGGCTGGCAGAGCCTTGGTGTGTTTGCACAGCTCTGGCTGGGTGCAGGCTGGCGGGTCGGGCGGGCGGCGCTGCCTGCTGGCTTGGAAAGCAGGTCAGCGCCAGGGGGAAGCAAAAGCAGGAGGGCTGGGGCTTTATTTATAGCTTCCTGGTGTTGCTTGGCACTATTGTTGGCCTCCAGGCTCCTTCCGAAGCATGCAGAGTCCGTCTTGCTGCTGTGGGTGCACTGAGGCCCTGGTGGGGCTGGGAGCGCTTTGGTGCAGCTGCAGTGAGAGGGCAGAATCTTCTGCATCCCCGTGGGGAGGGCAGGCAGCACAGAGGGGGGCTGCAGGGGCAGAGCAGCAGGGCTGGGGGGTTGTAAGGGTGCTTGGAAGGGGCAGGGAGGGGGGTGGGGGGAGGCAGAGTGGGCATGCGGTGCCCAAAGTGGGGCTGAACCCAAAGTGGGGCTGAACCCAAAGTGGGGCTTCCCATGGAGTTTTGGAGTGCATGACATGCAGAGCGTGATCTACGCGCGTGTATTGCAGGGCAGCTGGGTGTGCTGCTGCACCGAGCTGCTGCAGAACAGCCTTGTCCTGAGCCTGTCCACCTGAATGGCTGTCAGGTCCCATCGTGCACAGCTGGAGGCGGTGCTGAATGCTGGCTGCACAGCACGGTGTGTGAGCTCAGGGCTGCAGGTGCTCTGCATGGCGTTCAGTGCACCCTCCCAGTGCAGAGCACTGCTGCTCACATGGGCTTTAGAGGAGCACAAAGTGAGGAGCACCACACTGAGTCCCGTGGCTTCAGTGGGAGATGTGTGACAACAGATTGGGCTTTGGGCTCCTGAGCCCTGCTGGTGTTTGTGAAGAATCTTGTTCTGTGCAGGACAAGGGATGATTGTGATGTGGGACTGCAGGCCAGCACCAAGATCCCCCGCCCCTTGCAGGCACGAATGATCCCAACCCCAGCATTTCCTTCTGTGCTGTCCTGAAGATGGGAGAGCTCCAAGCTTTGGGTTTTCCTCAGGACATGCCAGGCGTTAGAGGAAAGGTCCCCATTTATTGCCTTGGGGTCGGTAGTGCCATGTGTGCTCTGTGCCCTGGGGAAGCCTTTGGCAGGCTTTGTTTAAAAAGAGAAAGAAAGGAAGGAAGAAAACAATAGCTGAACACCAAGGAAGTGCTGGATGAGGCCCAGGGGTTGAATGAAGTGCAGATGTTCTGTCACCTATAAATTACCATGCTCCATGGAATGCAGTTTGTCCCACCAGGAGTGGATGGGAGCATGGAAACACTGCAAGATGTTGAGGCATGAAAGTCCTCGAGCAGAGATGCTCACCCAGTGCTGCTCTTAAGGGGCAGAGATGCTCACCCAGTGCTGCTCTTACTGAACTCCTGGAAGCCATGAGCAAAATCGGGGGACTGAACGTGGGAGGTCGTTATGAGAGGGAAAATCCCTGTCCTGGAGGCTGGCAGTGACATGGAAACCAGAGGCAGAGATTGGACAGCTGTGCCCCAGGGCTGGGGATGGAGCGGTTCTGCACAGTCCTGACACACAGTGAGCTCCCAAACTGCTTCCCTCGCTGTAGGGTGGGAGCCAGGACTGCTGCTGTGCTGCCTCCTCCTCCCTGCAGCCCCCAGACCCGTTGGATTCTGGAAGGCCTTTTGTGTTTGCCTTTGGGTTCGTGATGGAGGCCCATCCATCTGAAGCGCTTGGAGCTTGTTTCCACGCAGGCACTGAAGTGCAAAGGAGCACCGAACCTCAGTCTGCTCTAATCCAGAAGAGGAGCCTTGTTTGATAGCATCCTTGATTGCTTTCTGGGGCCTTTTGTGATGCAGGTGGGGGATGTAGGAGGGGGTTTGGTGCCCCTCTGCCCGGTACCTTCCTCCTCACTGCGGCTGCCATGGCTGCAGCCCAGAGCCGGGTCTCCTCCTCCTCCTCCTCCTCCTCCTCTGGGCAGGGAGTTCAGAGAGCCTGGGAAAGAGGGAGGGAGCAGCAGAGCCCGCTTGGCTCTTCCCAGCTCCTGGCTCTGCCCTCCCTCCTTCCCTGCCCGGTCTACTTTGAACGATCCCATTGCCAGTGTACAGCAGATTAAGAAGAGGGGGCTCTGGGAAGGGGAGCCGGCGGCGGGGGGGAGCAGGAGGAGCTGTGCACAGCCCTTTTTGGCAGCGAGAGATCCCGTTTCATTCCTTCTCTGCTGGTTGAGCTCGAAGGGAGATTGTGTGGCTGGCATGCCCCTGCTGTGGCTGTGCTCCCCCCCCCCCCCCCGCAGCCTGGCCTGCCCCGTACCCCCCCTGCCAAGCTCCAGCTGCTCAGCCCTGCATGGAGAGAGCTTGTTTTCCATGCAGTTTGTTGCTGGAGGCAGGTTTGTGCTCCCTGCAGACCACAGCTCACCCAGCATGCCTGCCTGCTGTAGGGAGCACCCGGCAGCTGCAAGGTAGGGCTCGGCTTTGGCTTGCAAAGATGGGATGCGGGCAGTGAGAGGTTTCCTGCACGCAGTGCATCCTCTTTTTCTCCTCCTCCTCCTCCTCTCGTGGGTTCTGCTTCATGGCACAGCCATGCAGGTATGGAAAGGTTTCCAGAGGAGCACTGGGGAGATGAGATGCTGGGCACAGCAGAGCCCGGTGCAGAGCAGGCACTTGAGAGGCAGGGGATGGTGCTGCTGCCCTCCCTTCTTTGCACCCTGTGGTTCTGGCAGGAAGTATTTGGAGCCTTCCAGTTCCTGGAGAGAACCCACAGCTGCTGAGGGAGGCCTGGGTTGCCTTAGTGCATAGCAGCATGCAGCCAGGAGGGACGGAGCCTGTTCCTGTCCTGGTGCCTTTGTGGGCATCACCATCCCACCAGCACCTCGCTCTGCCCACCTGCTGAGCCGTGGCACTGATTACCATGCCCATTTAACACAGGGCACTGCGTTGCTCTGCTCCTCATCGGGCTGCAGTGGCAGAGCACGACGGCTGCTCTCTGCGGGGCAGATCTGCCGTTCGTGTGCAGTTGCTCAGCACGTGGAGTCAGGGCCAGATCTTCAAAAGAGCTCCGTGCCCAGCGTTTATTATTGTGGAGGACGTGATGGTTTATTCAAGCATCTGAATGGGAACTGAGGCGTTCCAGAAATCTGGTCCCTATTGTGCAGGCAGGGCTCTTGTTGAATATGTACATATGGGCGCACTCCTACGGAGAAGCGGAGCACTGCTCAGTTGGCTGTTGCAGACTGTACCAGCAGTGAGGGGAGGCTGCTCAGCCAGGAGACAGGCAGCATTTTGGAGCTGGAGGATGAGAGTTGGGCTGTTAGCATCGCGGTGACGTGGTGGGAGGTTTTATGGCTCGCAGTGGTGACAGCCAGGACATTCCTGCCCTGCCCCACGTGGGGGTGTGTGTGTGTGTGTAGGTGTGTAGGCTCAGTGTCACAGCCACGGCTTGGCTCCCTCTTGTCCCATCTTGACTGTGAATGTGAAGTTAAATGATGCCAGCATTGTCTTGCTGGTCCTGACAGCATCGTTCTGTATCTCCCCCCATTGCACCTTCATGGCTGAAGTGCAGAAATGCATTCAGGGGTGTGAAAGCGAGGGAATGAGCTCTGTGTTGTAAGGAGGTGTGTGGCTCCTGCCTTCATTTCCATGGCTCTTGCAGCATGTTCTGATTTGAGAGCACTCATCCAGGTGGGATTGGGGTCCCCACCTCCTCCTTCTGGATTTTGCTGTGACTTCCTATGAAGTCACCACGAGTTCTCTCATCCCATGCGCCCTCCCTTCCCAAGTTGCAGAATGAGGTGCAGACATTAAAAAGCTCTCTTGAGCTCATCAGCACTCTGCTGTGTGCTGTCAAGTGAATGCAGACGGTTGCTGCTGCATCCCATCCCTGGCGTGCAGCATCCCATCCCTGCCGTGGTGTGCTGGCAGTGGTAGCCCCAAGGCTCTGGCTGCAGGTGGAGGCAATCTGCACCTTCTGGAGGGTCCCTCCCCTGTGATTGCTGGGTTCTGAGCACGTTCTTGAGGTGAGGATTCGGCTCCTGGGGTAAAACAGCCATGTGAAGGAGTGGGATCCTGGTTACAGCCCATTCTGCAGATGGTGGAAGCAAGGTGGGCAGGACTCGGTGTTTCTATCCTCCCAATGGCAGCACAGGGTGGATCTGAGGGTCCTTCCAGGAAGATCTCCTTGCCCAAGGAGGCTGTGGATGTCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGATGGTTGGCGACCCTGCACATAGCAGGGAGTTGGAACTACATGATCATTGTGGTCCTTTTCAACCCGGGCCATTCTATGGTTCTATGATAAGGTGAGAGAGTGGGGGTAAGGGGCACAGAGCCCCAGTTGGGGAAATAGCAAGAGGGAAGCTCAGGTTTCTTGCAATCAGCTTGTGAAATCCTTCCCTATCTTCTTAAGCATGCACTGATTCGGGGCCTTCTGTTGATATCCTGCGCTCCAGATGTTGGCTGCAGCTGGAGCAGAGATAGTGGGACACTCCCAGGCAGAAGCCGGGCTGTGGGGGAAGGGACCATTGGGCTCTTGTGGATGGGTGGGGAGGGAAAGAGGAATATGAATGTATGGTTGTAAATCCACCCCTACACACCCTCCTTTCTTTTCCCTTACAACCGCTATTCTCAGCAGAGGCAAAGTAAGCCTTTCCAGCACCCTCTGATTTCTTTTGCAG
Seq C2 exon
AGTCGTAAGGACAAAGAAAGACCTAAACAGAAGCACAAAAAACGTCCGGAATCTCCCACCAGCCTTCCAACACCCACGGTGCCCATCGCTGCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]