RnoINT0092958 @ rn6
Intron Retention
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85612116-85613028:+
Coord C1 exon
chr10:85612116-85612322
Coord A exon
chr10:85612323-85612929
Coord C2 exon
chr10:85612930-85613028
Length
607 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
GTCACGTTTCCCTCCCCCAGAGT
3' ss Score
9.32
Exon sequences
Seq C1 exon
AAGACATCCCGGCACTCCAGCGGGGGAGGAGGGGGAGCAGGAGGAGGCGGCAGCGGAGGCAGCGGCAGCGGCACCAGCGGTGGTGGAGGTGGCACAGGGGGAGGCGGCAGCAGCAATAGCTTCCTTAGCGGCAGGAGAAGCCGGTCAGCCTCACCGTCCACCCAGCAAGAGAAGCACCCTACCCACCATGAGAAGGGCCAGAAGAAG
Seq A exon
GTGAAGGCGCTCTCTCACACACACTTCTTGTCAGAGACTACCACCAGGTGCCTTGGCCATCTGAGGCCACTGAGGTTGAAGAGGGAGCTTGGGAAGCACAGCTTAACCTGCCTGGCTTCTGTGTCGGTGTATTCTCCAGTTTTCTTTATGACACTACAGTGTCCCCAACCTCCAGTTTGTCCCTACATGTTTACACACATCTCCAGTCTGTCTCCTTGTGCCCCATACCACGGAGTGCCCACTTGTGTTCAGTGTGTGTTCCAGGAGGGACACTCTTGTGAGGGAGTGCCTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGCTCTGTCACTGGCACGATAATGGGACAGGCTATTTTTAGCAGGAGGGAGGATGGGGGAGGGGCTCCTGGCTCTCAGAGGATCTTGTCTGAGCCACTCCTGTCCAGCTGGAGTTTTCCATCCCTCTATAGCCAGAGAGGACACACTGAGCCCCACTCCTAAGAGGGGTTTGGTTTTTCACACCCACATGTCATGGTTGACCTCCTTTGAACAACCCCCGCATCAATATCTGGTCACGTTTCCCTCCCCCAG
Seq C2 exon
AGTCGAAAGGACAAAGAACGCCTTAAACAGAAGCACAAGAAGCGGCCTGAGTCTCCCCCCAGCATCCTCGCCCCGCCTGTGGTTCCCACTGCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285:ENSRNOT00000092122:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACATCCCGGCACTCCAG
R:
GAGACTCAGGCCGCTTCTTG
Band lengths:
262-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]