GgaINT1018645 @ galGal4
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8127212-8127940:-
Coord C1 exon
chr19:8127855-8127940
Coord A exon
chr19:8127506-8127854
Coord C2 exon
chr19:8127212-8127505
Length
349 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTCTGCATCTCTTTATCAGGCA
3' ss Score
8.46
Exon sequences
Seq C1 exon
CTATTCGCTCCTGGTTAGCCAAGAACCGCTTCCAAAGGATGCGCAGGGCTGCAGATGTCATTAAGCGTGGATGGAGGAAATGGAAA
Seq A exon
GTAAGTACGTTGGTACAGAAAAGGGTTAAAGTTGAGTGAGTGACGCTTTGCAGTGGTTTGAGAAATAATCTACCCCTATCAAATAACCGTACAAAACCTACACTGTCAGTTCTTCAGAAAACATTTCTCAAACAGAAGCATAGAAGATGGATGCCAATCTTCTCCAGCTGCTTGGGAGGGAGCTAGAGGCCACAGAATGAATTTGTTCCTAATTATCTTTACAGAATGGGAAAGCATCCCAAATGGTGTCCTATCCCTTATGTTGCACTTTGTTTTAGACTCTTTGTTTTGCAGTTTTAAATTTTGCTCAAGATTGTTTTAAGAATATTTTTCTGCATCTCTTTATCAG
Seq C2 exon
GCAAAAATGGCTGCTTTAGCAGCAGCAGAATTAGATGAGAACGATGAAAAGACACCTTTCTCAGCGATGTCAGCCAAATCACCATGCTCTTTGGAAACAGCTTGGCCTCTAAGTGCAATCATTCAGTTCTGGCCTCTTGGCCTCGTCCTGTCTGCTGCACCTGTTACCATAGTGGGACTCCGGAGAGAGCTGTCCCTGCTGGCATGCTTGAAAGTACTTCAGGGGATTGGCTGCTACAAGATGGAAAGCAGCTTCTTAGGCTGTGGCATCACTTCTGTTAGAGCTCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=37.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGCCAAGAACCGCTTCCA
R:
AACAGAAGTGATGCCACAGCC
Band lengths:
352-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]