RnoINT0096969 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72225087-72226266:+
Coord C1 exon
chr10:72225087-72225172
Coord A exon
chr10:72225173-72225966
Coord C2 exon
chr10:72225967-72226266
Length
794 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
AGGGATGTTTTCTCTTTAAGATC
3' ss Score
7.15
Exon sequences
Seq C1 exon
CTTTTCGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACAGTCATCAAGCACGCATGGCATAAGTGGAGA
Seq A exon
GTGAGTATGACTGGGGCCAGGGTGGGCAGTACTTGAAGACTGGGCTTCTGACAGGCCGAGAGGGAATGTCTGCCGCTGTGGTGTGGGTGTATTGTTAGGCCACAAAGCCTCTCAGCTTGTGTCCGTCCTCTTCATGAGGTTGGCTGAGTGGCATGTGCAGCTCCAGGAACAAACTGTCAAAGGACTGCGGTTTCTTTACGTTCTGCCATGTGCAGCCAGTCTAGTTCAGGGCATTGCAGCCAAAGGCCTCCAGTTACCTTGTCAAGATGATTTTCTATCTGCTAGAAAGATCTAGTGCGATGGCTGTGCGATGGCTCAGCAGGTAAAGGGGCTTGCTGCCAAGCCCATCCCACCTGAGTTCAACCCCAGGGACCCTCACGGTTGGCAACAAAGGCCCAAAAGCTGCCTTCTGACCTTCACAAGCATGCTCACACCCAACACATACACTACATACACACGTCACCTTTTATTTTGTTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGATGAGCCATCTCTCCAGCCCTTTGTTTTGCTTTTTAAAACAGAGTTTCTCTGTATACATCTGGCTGCCTGGAATGTAGAACAGGCTGGCCTAGAACTCAGAGAGATATGCCTGTTCCTGGGTGCTGGAATTAAAGGTGTGTACCACCATACCCAGCTATTTTATTTTTTTAAAGAGAGCTAAAAGGGATGTTTTCTCTTTAAG
Seq C2 exon
ATCAGAATGGCCTGTCTTGCCTCTAAAGAACTGGATGGTATGGAGGAAAAACTCATGCCTCAGGCTCCCGGTACCCTGCGTTCCTCGCTGTCCCCAGCACACACTAGGTTCCTGGGAGCAATAATCCACCTCTGGCCCCTGGGACTGGTGCTAGCCAACTCAGCTGATGGCATGCGTGGCTTTCAGAGGAAACTGGTAGCCCATGCCTGCCTTCGGCTTCCCGCAAGCGGCCCCAGCAACAAAGTCCAGACACCACAACAAGATCAGGCTGGTATCACATCCATCAGAGCACTGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.260
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=37.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTCCTGGTTAACTCGGAA
R:
CCAGCCTGATCTTGTTGTGGT
Band lengths:
354-1148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]