HsaINT0108455 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34854110-34855004:-
Coord C1 exon
chr17:34854919-34855004
Coord A exon
chr17:34854404-34854918
Coord C2 exon
chr17:34854110-34854403
Length
515 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
AGGGATATTTGCTTTTTAAGATC
3' ss Score
5.3
Exon sequences
Seq C1 exon
CCATTCGTTCCTGGTTAACTCGGAAACACATCCAGAGGCTGCATGCAGCTGCCACAGTCATCAAGCGTGCATGGCAGAAGTGGAGA
Seq A exon
GTAAGTAAGACCCAAGAAGTCGGGGTGGGCAGTGGATCAATTTTGGGGACCAGATGGACCCGAGTGGGAATGCTGGCTCTGCCACTGCAATGCAGGTGGCCTTGGGCAGGTTGTTTAGCCTCTCTGAGCCTCATATTCCTCATGTATGCAGTGGGCACAGTAACACCTACCCTGCAGGGTGGTTATGTAGGTGAAGAGTGGTATAAGCAACTCTGGGAATATACCAAACTCTGGGATGTACACTTTAGAAGACTGGGTTTTATGGCATATCAGTTATATCTTGATGGACTCTTATCTTGTTTTCAAGTAGCATATGTAAGGCCTAAGCACAGTTGCCTGGGGTGTATAGACTTGTGGCATATGGAACCAGTTTGGTTCAGGGCAGCCAGCTGTTTGCAACCAGGTGCCTTCAGTTCACCTTGTTAAGATGATTTGTTAAAGATAGTTTTGATTTCCATTTTCTGCTAAGAGGGCTAGATAAATCTAAAGCTATAAAGGGATATTTGCTTTTTAAG
Seq C2 exon
ATCAGAATGGCCTGCCTTGCTGCTAAAGAGCTGGATGGTGTGGAAGAAAAACACTTCTCTCAAGCTCCCTGTTCCCTGAGCACCTCGCCGCTGCAGACCAGGCTCCTGGAGGCAATAATCCGCCTCTGGCCCCTGGGACTGGTCCTGGCCAATACGGCTATGGGTGTAGGCAGCTTTCAGAGGAAATTAGTGGTCTGGGCTTGCCTCCAGCTCCCCAGGGGCAGCCCCAGTAGCTACACTGTCCAGACAGCACAAGACCAGGCTGGTGTCACGTCCATCCGAGCGCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_025109:21
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(55.0=37.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGAAACACATCCAGAGGC
R:
CTCGGATGGACGTGACACCAG
Band lengths:
351-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)