GgaINT1018701 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8300258-8301701:+
Coord C1 exon
chr10:8300258-8300366
Coord A exon
chr10:8300367-8301489
Coord C2 exon
chr10:8301490-8301701
Length
1123 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTA
5' ss Score
3.1
3' ss Seq
CTTTTTACCTCTGAAAATAGGAC
3' ss Score
6.53
Exon sequences
Seq C1 exon
GTGGACGTACCAAGAGTTCTTCAGCCGTTACCGTGTTCTCATGAAGCAGAAAGATGTCCTTAGTGACCGAAAACAGACATGTAAAAATGTCCTGGAGAAGCTGATTCTG
Seq A exon
GTACTAGATGTAGTCCTTAGAGCATTTGGAATCTGAAGGAATAAAGATAGGTCTCCTTGCTCAGTGCTGTCAGCCTTTGTCATACCTCAGCAGCCCCTTGCTTTACCTCCTACCTCCTTTTGCAGCCCTGCATTTCCAGACTATGCCATTAGCACCAGAATTGCACCTGAACTGATGTGGTTTCTTGGGATTTTTTAAGAACCAATGAGCAGTGGAGGAAATCAGGCTACAAAGAGACAGCTCTCGGTATTGCCCAGGTAGAGGGAGATTAATTGAGACTCACTCAGAAGAGAAAGAAATAAAGTTTTCTAAAAATGCAAAAGCAAGAAATTTGCCTTCCTGAAGTGCAATGCCAATGCTAAGATGTTTATGCAAATAAGAAAAATAAGTACTCTGCAGACAAGTTGGCTTTCCAAATTCTATGTCATTGGCTGGACTTAACTAAAATCTTTTGCCATTCATTTCAACTTGACGTCAATAAATCAACAAAACATTTTTTTTTTCTTATACCTTTGTATGGTTTCTGTTGTCTCAGGATTTCCCTCCAAGGAGTGCTGCAGCCATGCAGAGATAAAATATTATTCTCTTCCTGCTTCAGTTTTGAAATTTCGGATGTGTTTCAGGAGCATAGTTGTGTTTTGTTCTGGCTCAGTCCTGGTGGCAGTAAACAATGTGTACACATTTGAAGCCTGAGCTGTTTCCTTTGTACTGTGTAATATGGTTGAAAGTGAGCGGTTGGGAGGGGGGTCATCCACTGCTTAAGCAAGAAATTACAAATGTGCATTGCCTCTATCACTTTCATCCTCTGGGCCCCTTCTTCATCTCTTATAGCCTTCCGTGTCATTCACAAACTTTGTGGCGTTCTTCTTTAAGCAAATACCTTGTTTTATTTCTTTAGGCCCTGCTTGTGACCTTGTTATATTAATTTGTTAACAGAATCATACAGAGAAAATACTCTCCTTCACTAGCTAATTCAAGTCTAGATTTACTTTAAATATTACACAGGTAAATTTGCCTCTTTACTAATGGTACTTTCATTTAGCCTTCATGCCTTTTTTTTTTTTTTTTTCAATCTGTTAACATTTAATGCTATAACTGATCATCTTTTTACCTCTGAAAATAG
Seq C2 exon
GACAAGGATAAGTACCAGTTTGGTAAAACAAAAATATTTTTCCGGGCTGGTCAAGTAGCCTATCTTGAAAAAATAAGGGCAAATAAGTTGAGAGCTGCCTGTATCCGCATCCAAAAAACAATCCGAGGCTGGCTGATGAGAAAAAAGTACATGCGTATGAGGAGGGCTGCCATCACCATTCAGAGATATGTCAAAGGGCACCAAGCACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(2.0=19.7),PF0061222=IQ=WD(100=29.6),PF0061222=IQ=PU(85.0=23.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTACCAAGAGTTCTTCAGCC
R:
CATCGTGCTTGGTGCCCTTT
Band lengths:
318-1441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]