GgaINT1018795 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8358938-8359978:+
Coord C1 exon
chr10:8358938-8359092
Coord A exon
chr10:8359093-8359888
Coord C2 exon
chr10:8359889-8359978
Length
796 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GATTGCTTTATCATTTTCAGGAA
3' ss Score
9.52
Exon sequences
Seq C1 exon
ATTTAAAGCCACGTGGAGTTGTAGTCAATATGATACCCGGCCTTCCAGCTCACATCCTATTCATGTGTGTGAGGTATGCAGATTATCTGAACGATGCTGACATGCTGAAATCTTTCATAAATGTAACCATTGATGGTATCAAACAAGTTGTTAAG
Seq A exon
GTAGGAATTATATTTGGCTGTACTTTACTTTTTGATTTTCATGTCAAGTTTATAAGATGCATGCATAGTACCTGGGAAATGCTGATACTTGCATTTGCTAGTATTCCTATAGCAAATAGTGTTATTATTAGTGGCACTCCTTTTGGTGTTATTAGTAGTATCCCTATGAAGCCTACAGGTGAGGTTCTCCTGTGCTGAATATGTGAACATCTTTATCCAAATTCAGATATGTGAATGCTTTGTTGTATATTTGTGATGCAGTAGGACATCAGGTATGCTTGGTAGGAATGAACCACGCTTTATGCAGTTGAATTTGTTGTATAGGAAATGCTTGTATTTCGTTCACAAATTTATACCACATTTTACCCATAAGAAAAGCTTGTGCGTGTATATCTGATAAAAAGAAGACATGCTTCAGCAAAGTTAGAATTGTGTTTATATGTATTTCAGTTTCATTTCTGTATGAACATTGGTCACCCTTTCGCAGGAAGGCCTCCAATACACTACAGTGCTACAGGTAGAAATGTGTAACACTGGTTCAGACTGATGTATTTAGGCTGTCCCTTATATAGACTTAAACAGTATTTAATGAGTTAAAGAGGGGTCTTTGCTATATATTCAATAGCCTGAAAAAATCCCAGAATGATTTGTACAGCTTGCACATTACAGGTGCTATTTGTTCCTTCTTCTGTAGATAGGTGGTATTATTGCTAATTCTGTGATTTTCAGCTTCAGTTTTGAAATGAAATTAACTTCATGAGACAAAGCCAATATAAGATTGCTTTATCATTTTCAG
Seq C2 exon
GAAAACTCAGAAGATTTTGAGATGTTGTCTTTTTGGCTTTCCAATACATACTATTTCCTTAACTGTTTGAAGCAGTACAGTGGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACGTGGAGTTGTAGTCA
R:
TCTTCCCCACTGTACTGCTTCA
Band lengths:
238-1034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]