RnoINT0097320 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82236656-82237912:+
Coord C1 exon
chr8:82236656-82236810
Coord A exon
chr8:82236811-82237822
Coord C2 exon
chr8:82237823-82237912
Length
1012 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
ATTGCCTTCTCTTGTCTAAGGAA
3' ss Score
6.81
Exon sequences
Seq C1 exon
ACCTGAAGCCCCGAGGCGTGGTGGTGAACATGATCCCTGGGCTGCCAGCTCACATCCTGTTCATGTGTGTGCGGTATGCAGACTCCCTGAACGATGCCAACATGCTCAAATCCCTCATGAACAGTGCTATTAACGGCATCAAGCATGTGGTTAAG
Seq A exon
GTAGGGTAGCCTTTGATGTGGGTCCTTGGCGTGGTGTTTGATTTGGAAACGGTTCTGGGCAATGACCAGGCACCCCGGTCTTTGGCCTCTGACCTTTGGAGAGCTGTGTGATTAATAAGCAGAGCCACTAAGGGAGGACAAATGGACGAGATTCAGCCAGTGGGCCTCACAGACTTATGGAGAGAATGCAGTCTGGTGGTCACCACCCTTGCTTTTCCACCCCTCACGTGTGAGGGATATGTGCTCTACCAGTGTAGCAGTAAGGCAGATGGAACACTGAAAAATTACTCAGATCTTCTGTTGGCAAGTATATTAGTCTCCCTCCTAAAACATTATTATTTGTGCTGGAGAGATGGCTCAGTGGTTAAGAGCTCTGGCCACTTTTACAGGGGACCTGGGTTTGATTCCCAGAACCCACATGGTGACTCATAACCATTGATAACTTCAGTTCTAGGGGATCTAATGGCCTCTTTTAGACACATATGCCAACAACAACAACAACAACAACAACAACAACAACACACACACACACAATTTTTAAATTAAAACCTTATCGTTATGGTTTTTCCTAGTCCAGAAAAGAAGACCCATGTGCTCTTTAGGTTGGTGACTTTGTAAAGTTAAACACGATAGCTGACACCCCCCTCTCGTCCCACCCCAATCCCACATGCAGTTTGTTGAAGAAGATGGAGAACCTTCTTGTACTTCCCTTAAGGACTCTCCAGGTTGGAGGTTACATGGGGGCCCAGGCTCTATTTGGCCCTAGCTGTGTTCATCAGAATGACCAGGTAGCTAGTCCGCTCACAGTTGGCTACTCTGGGAAGGAGCCACATGTGCATGGCACACAGATCAGCAGGTGCCAGCTAAGCTAGTTCTTATGTTTGGCACGGGGTTTCAGTGTGTGATCCAGACTGGCTTCAGACCTGGAGATCTACCAGCCTCTGCCTCCCAGGTGCTGGGATTAAAGGTGTGTGCGGCTGCACCCATCCAATATTGCCTTCTCTTGTCTAAG
Seq C2 exon
GAACACTTTGAAGATTTGGAGATGCTGTCCTTCTGGCTTTCCAACACTTGTCATTTTCTCAACTGCCTGAAGCAGTACAGTGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGTGGTGGTGAACATGAT
R:
CTTCTCCACTGTACTGCTTCAGG
Band lengths:
230-1242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]