GgaINT1020418 @ galGal4
Intron Retention
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3904773-3905213:+
Coord C1 exon
chr27:3904773-3904897
Coord A exon
chr27:3904898-3905144
Coord C2 exon
chr27:3905145-3905213
Length
247 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
AGCCACGGGATGGGCTGCAGCGC
3' ss Score
-0.64
Exon sequences
Seq C1 exon
TGCATGACTCGCTCAGCAGCGTGGTGACAGCGCTGACGGCTGAGAGGGCTCGCCTGGAGGACATGCAGCGGGCGTTGGATCGCCGGCGCTCAGCCCCACGCCCTGGCAGTGCCGGCCCCACTGGG
Seq A exon
GTGAGGGGGGCTGCGGGCCCAGGGGGGGCTGTGCTGGGGTCAGGGGGCTCAGGTCTGGGGGGGGCTGCCCCTGTCCTGGGGGTGTGCTGCAAGTCATTGTGGCCTCGTCCAAATGCTGGGGGTCTGGGTGACCCTGCGTACACCTGAACCCCTCTGTGGGACTGGGGGAATGTTGTGGGGGATTTGGCTCAGCTCAGCCCCTCCGCAGACCCCCCTGCCGGGCCTGGAGCCACGGGATGGGCTGCAG
Seq C2 exon
CGCTTCCACTCGCTCTCCGTTTCCTCTGACGCCACCATGGACTCCTTTGCCTCACTACTCCCCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934:ENSGALT00000043335:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGACTCGCTCAGCAG
R:
ATCGGGGAGTAGTGAGGCAAA
Band lengths:
191-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]